C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: non-SMC condensin I complex, subunit D2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043848 Ncapd2-001 ENSMUSG00000038252 10090 - 6:125168007-125191701 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043848
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043848 5.911±2.62 2.285±0.40 4.177±0.07 23.784±2.51 4.340±1.33 6.978±1.77 3.798±1.03 2.009±0.36 18.833±24.05 3.133±0.76 1.728±0.59 10.753±5.05 12.515±6.39 16.975±4.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IEA nuclear chromosome
GO:0000793 IDA condensed chromosome
GO:0000796 IEA condensin complex
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0007076 IEA mitotic chromosome condensation
GO:0016020 IEA membrane
GO:0045120 IDA pronucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315579 NCAPD2-001 protein_coding Homo_sapiens 0 4399
ENST00000382457 NCAPD2-002 protein_coding Homo_sapiens 0 2595
ENST00000432906 NCAPD2P1-001 processed_pseudogene Homo_sapiens 0 1410
ENST00000535804 NCAPD2-006 processed_transcript Homo_sapiens 0 355
ENST00000538600 NCAPD2-013 processed_transcript Homo_sapiens 0 252
ENST00000539084 NCAPD2-003 nonsense_mediated_decay Homo_sapiens 0 4154
ENST00000539885 NCAPD2-007 processed_transcript Homo_sapiens 0 390
ENST00000542492 NCAPD2-014 processed_transcript Homo_sapiens 0 981
ENST00000545732 NCAPD2-011 retained_intron Homo_sapiens 0 351

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