C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: non-SMC condensin I complex, subunit D2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000010292 NCAPD2 9606 + 12:6493356-6531955 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315579 NCAPD2-001 6493379-6531955 protein_coding
  ENST00000382457 NCAPD2-002 6494093-6528091 protein_coding
  ENST00000535804 NCAPD2-006 6528547-6529171 processed_transcript
  ENST00000536090 NCAPD2-008 6517359-6518203 processed_transcript
  ENST00000536538 NCAPD2-009 6493401-6495165 processed_transcript
  ENST00000538600 NCAPD2-013 6521920-6523314 processed_transcript
  ENST00000539084 NCAPD2-003 6494099-6531476 nonsense_mediated_decay
  ENST00000539714 NCAPD2-005 6493387-6510720 protein_coding
  ENST00000539885 NCAPD2-007 6529260-6530730 processed_transcript
  ENST00000541399 NCAPD2-010 6493356-6511192 processed_transcript
  ENST00000542472 NCAPD2-012 6517793-6521933 processed_transcript
  ENST00000542492 NCAPD2-014 6523200-6528067 processed_transcript
  ENST00000545732 NCAPD2-011 6511225-6516871 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315579ENST00000382457ENST00000539084ENST00000542492
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315579 5.208±0.00 3.621±0.00 2.666±1.08 2.812±1.81 2.632±0.26 2.962±0.00 4.071±0.00 1.113±0.14 1.457±0.07 1.643±0.00 6.816±2.34 8.753±0.87 11.874±0.21
ENST00000382457 N/A N/A N/A N/A 1.654±0.00 N/A N/A N/A 1.300±0.00 N/A 7.775±0.00 N/A N/A
ENST00000539084 N/A N/A N/A 3.370±0.00 1.056±0.00 N/A N/A 1.753±0.00 N/A N/A 31.572±0.00 8.662±4.66 12.758±0.00
ENST00000542492 N/A N/A N/A N/A N/A N/A N/A N/A 2.796±0.00 N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000228 IDA nuclear chromosome
GO:0000278 TAS mitotic cell cycle
GO:0000793 IDA condensed chromosome
GO:0000796 IDA condensin complex
GO:0000797 NAS condensin core heterodimer
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0007067 IEA mitotic nuclear division
GO:0007076 IEA:NAS mitotic chromosome condensation
GO:0016020 IDA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IEA membrane coat
GO:0030261 IEA chromosome condensation
GO:0042393 NAS histone binding
GO:0045120 IEA pronucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005058 ncapd2 non-SMC condensin I complex, subunit D2 protein_coding Danio_rerio
ENSMUSG00000038252 Ncapd2 non-SMC condensin I complex, subunit D2 protein_coding Mus_musculus

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