C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: intermediate filament family orphan 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038271 Iffo1 10090 + 6:125145241-125161782 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000051171 Iffo1-201 125145244-125161774 protein_coding
  ENSMUST00000088276 Iffo1-202 125145241-125161782 protein_coding
  ENSMUST00000117675 Iffo1-002 125145251-125161776 protein_coding
  ENSMUST00000119527 Iffo1-001 125145241-125161782 protein_coding
  ENSMUST00000135559 Iffo1-003 125146026-125161776 retained_intron
  ENSMUST00000139071 Iffo1-008 125145241-125161782 retained_intron
  ENSMUST00000141230 Iffo1-004 125145266-125161776 retained_intron
  ENSMUST00000144364 Iffo1-005 125145241-125161782 nonsense_mediated_decay
  ENSMUST00000148835 Iffo1-007 125145801-125161776 protein_coding
  ENSMUST00000150417 Iffo1-009 125149007-125151487 processed_transcript
  ENSMUST00000150474 Iffo1-010 125153348-125161057 retained_intron
  ENSMUST00000153006 Iffo1-011 125149528-125152730 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051171ENSMUST00000088276ENSMUST00000117675ENSMUST00000119527ENSMUST00000135559ENSMUST00000139071ENSMUST00000141230ENSMUST00000144364ENSMUST00000148835
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051171 N/A 18.640±0.81 3.365±0.00 N/A N/A 3.080±0.00 N/A 3.944±0.77 0.974±0.29 N/A N/A N/A 2.343±0.00 4.011±0.00
ENSMUST00000088276 N/A 7.073±0.00 N/A 16.128±0.00 N/A 2.473±0.00 N/A 2.844±0.54 0.748±0.06 N/A N/A 8.151±0.00 9.765±0.00 10.180±5.21
ENSMUST00000117675 N/A N/A 3.326±0.00 N/A N/A 4.365±0.00 N/A N/A 0.931±0.00 N/A 1.005±0.00 7.484±0.00 N/A N/A
ENSMUST00000119527 N/A N/A 2.164±0.00 4.459±1.27 N/A 1.717±0.00 1.632±0.00 4.201±0.00 1.037±0.21 N/A 1.275±0.27 N/A 1.270±0.10 10.700±0.46
ENSMUST00000135559 7.851±1.44 13.355±4.03 3.112±0.95 2.715±0.34 8.463±1.84 2.383±0.00 2.289±0.06 5.231±1.90 2.167±0.50 10.175±3.69 1.677±0.25 9.153±4.68 1.879±0.47 9.585±2.54
ENSMUST00000139071 N/A N/A N/A 1.110±0.00 N/A N/A N/A N/A N/A N/A 0.493±0.08 2.125±0.00 0.554±0.00 N/A
ENSMUST00000141230 N/A N/A N/A 1.648±0.00 2.999±0.57 N/A 1.184±0.00 2.028±0.26 0.757±0.30 N/A N/A 3.614±0.00 1.976±0.91 N/A
ENSMUST00000144364 N/A 4.883±0.00 2.722±0.00 7.262±6.49 N/A N/A N/A N/A 1.202±0.57 N/A 1.875±0.66 4.139±0.00 1.745±0.57 1.660±0.00
ENSMUST00000148835 3.770±0.00 N/A N/A N/A N/A N/A N/A N/A 0.976±0.00 N/A 1.026±0.15 5.263±0.00 6.698±3.91 10.337±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062108 iffo1b intermediate filament family orphan 1b protein_coding Danio_rerio
ENSDARG00000062976 iffo1a intermediate filament family orphan 1a protein_coding Danio_rerio
ENSG00000010295 IFFO1 intermediate filament family orphan 1 protein_coding Homo_sapiens

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