C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intermediate filament family orphan 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144364 Iffo1-005 ENSMUSG00000038271 10090 + 6:125145241-125161782 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000144364
Transcript ID Adrenal Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000144364 4.883±0.00 2.722±0.00 7.262±6.49 1.202±0.57 1.875±0.66 4.139±0.00 1.745±0.57 1.660±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000125693 iffo2a-202 protein_coding Danio_rerio 0 224
ENSDART00000089379 iffo2a-201 protein_coding Danio_rerio 0 211
ENSDART00000123011 iffo1b-201 protein_coding Danio_rerio 0 207
ENSDART00000089386 iffo1b-001 protein_coding Danio_rerio 0 207
ENSDART00000144686 iffo2a-002 protein_coding Danio_rerio 0 195
ENSDART00000136504 iffo1b-002 processed_transcript Danio_rerio 9.99995e-41 172
ENST00000336604 IFFO1-001 protein_coding Homo_sapiens 0 1197
ENST00000355609 IFFO2-003 protein_coding Homo_sapiens 2.8026e-45 185
ENST00000356896 IFFO1-011 protein_coding Homo_sapiens 0 1197
ENST00000396830 IFFO1-010 retained_intron Homo_sapiens 0 1044
ENST00000396840 IFFO1-008 protein_coding Homo_sapiens 0 1197
ENST00000416166 IFFO2-002 protein_coding Homo_sapiens 0 267
ENST00000436152 IFFO1-201 protein_coding Homo_sapiens 0 953
ENST00000455833 IFFO2-001 protein_coding Homo_sapiens 0 267
ENST00000465801 IFFO1-003 protein_coding Homo_sapiens 0 933
ENST00000471408 IFFO1-004 retained_intron Homo_sapiens 0 935
ENST00000472558 IFFO1-005 retained_intron Homo_sapiens 0 1026
ENST00000487279 IFFO1-007 nonsense_mediated_decay Homo_sapiens 0 955
ENST00000488007 IFFO1-006 retained_intron Homo_sapiens 0 846
ENST00000494072 RP13-279N23.2-001 nonsense_mediated_decay Homo_sapiens 0 267
ENST00000615885 IFFO1-202 protein_coding Homo_sapiens 0 953
ENST00000619571 IFFO1-203 protein_coding Homo_sapiens 0 1197

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