C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: intermediate filament family orphan 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000010295 IFFO1 9606 - 12:6538375-6556083 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336604 IFFO1-001 6539528-6556071 protein_coding
  ENST00000356896 IFFO1-011 6539539-6556073 protein_coding
  ENST00000396830 IFFO1-010 6539607-6549113 retained_intron
  ENST00000396840 IFFO1-008 6539528-6556071 protein_coding
  ENST00000436152 IFFO1-201 6538375-6551900 protein_coding
  ENST00000465801 IFFO1-003 6538961-6551900 protein_coding
  ENST00000471408 IFFO1-004 6538961-6550467 retained_intron
  ENST00000472558 IFFO1-005 6538961-6549265 retained_intron
  ENST00000487279 IFFO1-007 6539528-6556071 nonsense_mediated_decay
  ENST00000488007 IFFO1-006 6539577-6556071 retained_intron
  ENST00000615885 IFFO1-202 6539540-6556063 protein_coding
  ENST00000619571 IFFO1-203 6539529-6556083 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336604ENST00000356896ENST00000396830ENST00000396840ENST00000465801ENST00000472558ENST00000487279ENST00000488007ENST00000615885ENST00000619571
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336604 N/A N/A N/A N/A 1.268±0.00 N/A N/A N/A N/A N/A N/A 3.417±0.41 2.385±0.30 4.176±0.00
ENST00000356896 2.307±0.00 5.643±0.00 0.449±0.00 7.266±0.00 1.868±0.00 2.647±1.88 0.763±0.31 2.286±0.00 1.657±0.00 3.425±2.22 1.938±0.00 6.086±0.00 1.745±0.42 4.550±0.00
ENST00000396830 3.438±0.00 8.023±0.00 N/A 4.350±0.00 2.492±0.00 N/A 0.689±0.00 1.955±0.00 0.947±0.00 2.047±0.00 1.378±0.39 3.500±1.98 4.676±1.87 10.131±4.91
ENST00000396840 2.626±0.00 N/A N/A 3.255±1.40 N/A N/A 0.838±0.63 N/A N/A N/A 1.558±0.00 0.202±0.00 N/A N/A
ENST00000465801 N/A N/A N/A N/A N/A N/A N/A 0.951±0.00 N/A N/A N/A N/A N/A N/A
ENST00000472558 N/A N/A 0.896±0.00 N/A N/A N/A N/A N/A 0.839±0.00 N/A N/A 0.141±0.00 N/A N/A
ENST00000487279 N/A N/A N/A N/A N/A 0.624±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488007 N/A 5.253±0.00 N/A N/A 0.798±0.46 0.672±0.24 0.876±0.00 0.378±0.00 1.067±0.00 1.026±0.00 0.439±0.00 2.738±0.91 2.035±0.47 3.677±1.72
ENST00000615885 N/A N/A N/A N/A N/A N/A N/A N/A 1.475±0.00 N/A N/A N/A 1.830±0.00 N/A
ENST00000619571 N/A N/A N/A N/A 1.042±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062108 iffo1b intermediate filament family orphan 1b protein_coding Danio_rerio
ENSDARG00000062976 iffo1a intermediate filament family orphan 1a protein_coding Danio_rerio
ENSMUSG00000038271 Iffo1 intermediate filament family orphan 1 protein_coding Mus_musculus

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