C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TSR1 20S rRNA accumulation
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038335 Tsr1 10090 + 11:74898071-74909342 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045807 Tsr1-001 74898078-74909342 protein_coding
  ENSMUST00000128230 Tsr1-006 74898114-74908494 nonsense_mediated_decay
  ENSMUST00000130910 Tsr1-002 74905211-74908343 retained_intron
  ENSMUST00000144019 Tsr1-007 74901713-74903905 retained_intron
  ENSMUST00000153316 Tsr1-005 74903970-74908314 nonsense_mediated_decay
  ENSMUST00000155702 Tsr1-004 74898071-74904940 nonsense_mediated_decay
  ENSMUST00000155785 Tsr1-003 74898098-74901855 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaENSMUST00000045807ENSMUST00000155702
Transcript ID Bladder Brain Liver Muscle Ovary Placenta
ENSMUST00000045807 9.121±1.66 5.055±0.00 9.517±4.88 4.425±1.06 11.928±0.44 12.408±3.11
ENSMUST00000155702 N/A N/A N/A N/A N/A 35.068±3.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RP CIL_0007RP_0002 VISTA 11:74746156-75348336
CIL_00093G CIL_00093G_0002 VISTA 11:74749027-75350435

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005730 ISS nucleolus
GO:0008150 ND biological_process
GO:0042255 ISS ribosome assembly
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007744 tsr1 TSR1, 20S rRNA accumulation, homolog (yeast) protein_coding Danio_rerio
ENSG00000167721 TSR1 TSR1, 20S rRNA accumulation, homolog (S. cerevisiae) protein_coding Homo_sapiens

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