C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167721 TSR1 9606 - 17:2322503-2337507 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000301364 TSR1-002 2322503-2337507 protein_coding
  ENST00000571806 TSR1-004 2334785-2336657 nonsense_mediated_decay
  ENST00000575049 TSR1-005 2324691-2330966 nonsense_mediated_decay
  ENST00000576112 TSR1-007 2333390-2336457 protein_coding
  ENST00000576202 TSR1-001 2335565-2336443 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301364ENST00000576112
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301364 9.367±0.00 34.583±0.00 2.305±0.00 4.330±0.00 9.849±5.30 5.481±2.74 5.613±3.62 4.524±2.98 4.330±0.00 5.051±0.00 19.860±0.00 10.909±2.63 10.727±4.69 18.767±1.54
ENST00000576112 N/A N/A N/A N/A N/A N/A 3.757±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093G CIL_00093G_0001 VISTA 17:1876478-2477942
CIL_0007RP CIL_0007RP_0001 VISTA 17:1878704-2480995

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005730 ISS nucleolus
GO:0042254 IEA ribosome biogenesis
GO:0042255 ISS ribosome assembly
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007744 tsr1 TSR1, 20S rRNA accumulation, homolog (yeast) protein_coding Danio_rerio
ENSMUSG00000038335 Tsr1 TSR1 20S rRNA accumulation protein_coding Mus_musculus

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