C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | TSR1 20S rRNA accumulation | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000128230  |
Tsr1-006 |
ENSMUSG00000038335 |
10090 | + |
11:74898114-74908494  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007RP | CIL_0007RP_0002 | VISTA | 11:74746156-75348336 |
| CIL_00093G | CIL_00093G_0002 | VISTA | 11:74749027-75350435 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005575 | ND | cellular_component |
| GO:0008150 | ND | biological_process |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000301364
|
TSR1-002 | protein_coding | Homo_sapiens | 0 | 2039 |
|
ENST00000571806
|
TSR1-004 | nonsense_mediated_decay | Homo_sapiens | 1e-20 | 104 |
|
ENST00000575049
|
TSR1-005 | nonsense_mediated_decay | Homo_sapiens | 0 | 298 |
|
ENST00000576112
|
TSR1-007 | protein_coding | Homo_sapiens | 0 | 246 |
|
ENST00000576202
|
TSR1-001 | retained_intron | Homo_sapiens | 4e-34 | 148 |
