C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: armadillo repeat containing 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038525 Armc10 10090 + 5:21645813-21662694 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000072896 Armc10-001 21645879-21662694 protein_coding
  ENSMUST00000095495 Armc10-003 21646053-21662608 protein_coding
  ENSMUST00000139521 Armc10-005 21648513-21652012 retained_intron
  ENSMUST00000146599 Armc10-004 21646017-21648663 nonsense_mediated_decay
  ENSMUST00000148873 Armc10-002 21645813-21661616 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072896ENSMUST00000095495ENSMUST00000139521ENSMUST00000146599ENSMUST00000148873
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072896 23.274±13.11 28.795±5.49 14.872±1.23 26.984±17.50 20.074±6.21 18.952±3.95 4.983±0.68 14.081±1.08 6.390±2.09 18.537±1.10 1.572±0.24 37.524±17.98 12.678±1.86 2.142±1.18
ENSMUST00000095495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.249±0.07 N/A N/A N/A
ENSMUST00000139521 N/A N/A N/A 4.886±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146599 N/A 71.442±29.83 N/A N/A N/A 20.573±3.28 N/A N/A 6.453±1.67 N/A N/A 62.164±35.75 N/A N/A
ENSMUST00000148873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.118±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y6 CIL_0007Y6_0002 VISTA 5:21195900-21797355
CIL_0005CL CIL_0005CL_0002 CGP 5:21543527-21662694
CIL_0005CI CIL_0005CI_0002 CGP 5:21645813-21701396

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion
GO:0005783 IEA endoplasmic reticulum
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0040008 IEA regulation of growth

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062960 ARMCX3 armadillo repeat containing, X-linked 3 protein_coding Danio_rerio
ENSG00000170632 ARMC10 armadillo repeat containing 10 protein_coding Homo_sapiens

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