C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal peptide, CUB domain, EGF-like 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038677 Scube3 10090 + 17:28142316-28174852 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043503 Scube3-001 28142316-28174852 protein_coding
  ENSMUST00000132670 Scube3-004 28153602-28170145 protein_coding
  ENSMUST00000137147 Scube3-002 28152445-28171514 processed_transcript
  ENSMUST00000142170 Scube3-005 28165809-28167648 retained_intron
  ENSMUST00000148342 Scube3-003 28160761-28173027 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043503ENSMUST00000132670ENSMUST00000137147ENSMUST00000142170ENSMUST00000148342
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043503 0.114±0.07 4.933±0.46 0.575±0.00 4.660±3.08 0.753±0.29 0.148±0.00 0.184±0.04 0.678±0.14 0.072±0.07 0.775±0.48 0.054±0.01 1.082±0.59 0.119±0.00 1.277±0.06
ENSMUST00000132670 0.161±0.09 N/A N/A N/A 0.154±0.00 N/A N/A N/A N/A 0.269±0.00 0.052±0.00 0.433±0.00 N/A 1.595±0.27
ENSMUST00000137147 0.151±0.00 N/A 0.332±0.00 N/A 0.432±0.09 0.230±0.05 N/A N/A 0.089±0.07 N/A 0.059±0.02 0.785±0.45 0.196±0.05 N/A
ENSMUST00000142170 N/A N/A N/A N/A 1.887±0.00 0.791±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148342 N/A N/A N/A N/A N/A 0.241±0.00 N/A N/A N/A N/A 0.042±0.01 0.301±0.00 0.116±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UQ CIL_0008UQ_0002 VISTA 17:28043766-28646334
CIL_0002ET CIL_0002ET_0002 CGP 17:28066747-28174852
CIL_0002ES CIL_0002ES_0002 CGP 17:28142316-28205886

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region
GO:0009986 IEA cell surface
GO:0051260 ISS protein homooligomerization
GO:0051291 ISS protein heterooligomerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011490 scube3 signal peptide, CUB domain, EGF-like 3 protein_coding Danio_rerio
ENSG00000146197 SCUBE3 signal peptide, CUB domain, EGF-like 3 protein_coding Homo_sapiens

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