C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glucosaminyl (N-acetyl) transferase 1, core 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038843 Gcnt1 10090 - 19:17326141-17356667 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000169897 Gcnt1-201 17326143-17339568 protein_coding
  ENSMUST00000174137 Gcnt1-002 17332246-17356667 retained_intron
  ENSMUST00000174236 Gcnt1-001 17326141-17356667 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000169897ENSMUST00000174137ENSMUST00000174236
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000169897 N/A N/A N/A 0.047±0.00 N/A N/A N/A 38.563±0.00 0.043±0.01 N/A 0.027±0.02 1.125±0.25 0.867±0.00 0.029±0.00
ENSMUST00000174137 N/A 0.346±0.22 N/A N/A 0.997±0.21 N/A N/A N/A N/A N/A N/A N/A N/A 0.060±0.01
ENSMUST00000174236 2.918±1.97 0.340±0.13 4.994±0.69 0.183±0.03 2.825±0.75 8.285±2.35 0.639±0.07 29.823±0.00 6.954±6.34 2.397±0.21 0.106±0.10 8.219±3.41 4.564±1.80 0.096±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AK CIL_0009AK_0002 VISTA 19:16783804-17385681

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003829 IEA beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005802 IEA trans-Golgi network
GO:0006486 IEA protein glycosylation
GO:0009101 ISS glycoprotein biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0031985 ISS Golgi cisterna
GO:0032868 IEA response to insulin
GO:0048729 IGI tissue morphogenesis
GO:0050901 ISS leukocyte tethering or rolling
GO:0060352 ISS cell adhesion molecule production
GO:0060993 IGI kidney morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000187210 GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 protein_coding Homo_sapiens

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