C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synovial sarcoma translocation gene on chromosome 18-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039086 Ss18l1 10090 + 2:180042509-180070201 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041126 Ss18l1-001 180042509-180070201 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041126
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041126 3.752±0.51 9.896±1.25 2.643±0.02 18.827±8.84 3.641±2.05 4.393±1.19 1.460±0.43 3.557±0.37 1.665±0.66 4.347±0.42 0.630±0.22 6.935±3.89 1.202±0.40 1.652±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000134 CIL_000134_0002 CGP 2:180036373-180070201
CIL_0001DM CIL_0001DM_0002 CGP 2:180042509-180085902

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000775 ISS chromosome, centromeric region
GO:0000776 ISO kinetochore
GO:0000780 IDA condensed nuclear chromosome, centromeric region
GO:0003677 ISA DNA binding
GO:0003700 ISA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 ISA regulation of transcription, DNA-templated
GO:0016358 IMP dendrite development
GO:0016568 IEA chromatin modification
GO:0016604 IEA nuclear body
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0050773 IEA regulation of dendrite development
GO:0050775 IMP positive regulation of dendrite morphogenesis
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000184402 SS18L1 synovial sarcoma translocation gene on chromosome 18-like 1 protein_coding Homo_sapiens

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