C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cDNA sequence BC017643
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039294 BC017643 10090 - 11:121222588-121229322 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038709 BC017643-001 121222588-121229309 protein_coding
  ENSMUST00000106115 BC017643-003 121222588-121229305 protein_coding
  ENSMUST00000133535 BC017643-007 121223664-121228786 retained_intron
  ENSMUST00000137299 BC017643-004 121224226-121229095 protein_coding
  ENSMUST00000147490 BC017643-002 121224597-121229322 protein_coding
  ENSMUST00000149351 BC017643-006 121223947-121227382 retained_intron
  ENSMUST00000156214 BC017643-005 121226771-121229223 nonsense_mediated_decay
  ENSMUST00000169393 BC017643-008 121224570-121229235 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038709ENSMUST00000106115ENSMUST00000147490
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038709 8.026±2.03 9.289±1.52 20.988±2.71 15.227±2.18 14.755±4.57 12.975±4.74 4.223±0.73 6.233±0.66 7.174±1.99 10.196±4.51 4.211±0.00 15.935±3.14 7.661±1.76 4.176±0.00
ENSMUST00000106115 5.669±1.79 N/A N/A N/A N/A N/A N/A N/A 7.228±2.36 N/A N/A 14.326±1.17 6.188±1.12 3.726±0.61
ENSMUST00000147490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 53.182±4.14 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054N CIL_00054N_0002 CGP 11:121177591-121222655
CIL_00054K CIL_00054K_0002 CGP 11:121204433-121229322
CIL_00043T CIL_00043T_0003 CGP 11:121222588-121255856

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071414 C12H17orf62 (1 of 2) chromosome 17 open reading frame 62 protein_coding Danio_rerio
ENSDARG00000091228 C12H17orf62 (2 of 2) chromosome 17 open reading frame 62 protein_coding Danio_rerio
ENSG00000178927 C17orf62 chromosome 17 open reading frame 62 protein_coding Homo_sapiens

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