C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cDNA sequence BC017643
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038709 BC017643-001 ENSMUSG00000039294 10090 - 11:121222588-121229309 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038709
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038709 8.026±2.03 9.289±1.52 20.988±2.71 15.227±2.18 14.755±4.57 12.975±4.74 4.223±0.73 6.233±0.66 7.174±1.99 10.196±4.51 4.211±0.00 15.935±3.14 7.661±1.76 4.176±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054N CIL_00054N_0002 CGP 11:121177591-121222655
CIL_00054K CIL_00054K_0002 CGP 11:121204433-121229322
CIL_00043T CIL_00043T_0003 CGP 11:121222588-121255856

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306645 C17orf62-004 protein_coding Homo_sapiens 0 643
ENST00000342572 C17orf62-003 protein_coding Homo_sapiens 0 368
ENST00000434650 C17orf62-001 protein_coding Homo_sapiens 0 477
ENST00000437807 C17orf62-006 protein_coding Homo_sapiens 0 643
ENST00000577436 C17orf62-034 protein_coding Homo_sapiens 0 477
ENST00000577471 C17orf62-030 protein_coding Homo_sapiens 0 414
ENST00000577696 C17orf62-029 protein_coding Homo_sapiens 0 459
ENST00000577707 C17orf62-019 retained_intron Homo_sapiens 0 244
ENST00000577732 C17orf62-033 protein_coding Homo_sapiens 0 643
ENST00000577834 C17orf62-022 protein_coding Homo_sapiens 0 409
ENST00000577888 C17orf62-012 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000578064 C17orf62-018 retained_intron Homo_sapiens 1e-19 100
ENST00000578895 C17orf62-008 retained_intron Homo_sapiens 0 479
ENST00000578913 C17orf62-036 protein_coding Homo_sapiens 0 520
ENST00000578919 C17orf62-011 protein_coding Homo_sapiens 0 643
ENST00000578941 C17orf62-002 retained_intron Homo_sapiens 0 375
ENST00000579444 C17orf62-040 retained_intron Homo_sapiens 0 466
ENST00000579751 C17orf62-038 protein_coding Homo_sapiens 0 220
ENST00000580560 C17orf62-028 processed_transcript Homo_sapiens 0 472
ENST00000581196 C17orf62-010 processed_transcript Homo_sapiens 0 477
ENST00000582395 C17orf62-027 retained_intron Homo_sapiens 0 209
ENST00000582545 C17orf62-031 protein_coding Homo_sapiens 0 209
ENST00000582608 C17orf62-020 retained_intron Homo_sapiens 0 237
ENST00000582725 C17orf62-035 nonsense_mediated_decay Homo_sapiens 0 521
ENST00000583359 C17orf62-025 processed_transcript Homo_sapiens 0 355
ENST00000583617 C17orf62-037 protein_coding Homo_sapiens 0 520
ENST00000583778 C17orf62-023 retained_intron Homo_sapiens 2e-27 126
ENST00000584024 C17orf62-005 nonsense_mediated_decay Homo_sapiens 0 374
ENST00000584408 C17orf62-021 nonsense_mediated_decay Homo_sapiens 0 466
ENST00000584503 C17orf62-024 processed_transcript Homo_sapiens 0 525
ENST00000584891 C17orf62-017 processed_transcript Homo_sapiens 0 375
ENST00000585044 C17orf62-007 retained_intron Homo_sapiens 0 521
ENST00000585064 C17orf62-014 protein_coding Homo_sapiens 0 643
ENST00000585080 C17orf62-015 protein_coding Homo_sapiens 0 643

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