C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 17 open reading frame 62
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000178927 C17orf62 9606 - 17:82442589-82450829 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306645 C17orf62-004 82442643-82450829 protein_coding
  ENST00000336995 C17orf62-201 82442644-82445186 protein_coding
  ENST00000342572 C17orf62-003 82442589-82450770 protein_coding
  ENST00000434650 C17orf62-001 82442644-82450829 protein_coding
  ENST00000437807 C17orf62-006 82442644-82450709 protein_coding
  ENST00000536759 C17orf62-009 82442643-82445186 retained_intron
  ENST00000577436 C17orf62-034 82443660-82449605 protein_coding
  ENST00000577471 C17orf62-030 82444531-82450708 protein_coding
  ENST00000577696 C17orf62-029 82444498-82450708 protein_coding
  ENST00000577707 C17orf62-019 82444205-82450749 retained_intron
  ENST00000577732 C17orf62-033 82443849-82449726 protein_coding
  ENST00000577834 C17orf62-022 82444537-82450742 protein_coding
  ENST00000577888 C17orf62-012 82444035-82450775 nonsense_mediated_decay
  ENST00000578064 C17orf62-018 82445463-82450749 retained_intron
  ENST00000578895 C17orf62-008 82442644-82448053 retained_intron
  ENST00000578913 C17orf62-036 82444389-82450723 protein_coding
  ENST00000578919 C17orf62-011 82443892-82450776 protein_coding
  ENST00000578941 C17orf62-002 82445251-82450829 retained_intron
  ENST00000579444 C17orf62-040 82444073-82447681 retained_intron
  ENST00000579751 C17orf62-038 82443449-82445930 protein_coding
  ENST00000580560 C17orf62-028 82443902-82450728 processed_transcript
  ENST00000581196 C17orf62-010 82443903-82450829 processed_transcript
  ENST00000582395 C17orf62-027 82445505-82450734 retained_intron
  ENST00000582438 C17orf62-039 82442900-82444528 protein_coding
  ENST00000582456 C17orf62-032 82449901-82450670 processed_transcript
  ENST00000582545 C17orf62-031 82445864-82450708 protein_coding
  ENST00000582608 C17orf62-020 82445558-82450743 retained_intron
  ENST00000582725 C17orf62-035 82443532-82449320 nonsense_mediated_decay
  ENST00000583242 C17orf62-013 82449432-82450774 processed_transcript
  ENST00000583359 C17orf62-025 82445864-82450737 processed_transcript
  ENST00000583617 C17orf62-037 82443456-82450717 protein_coding
  ENST00000583778 C17orf62-023 82448854-82450741 retained_intron
  ENST00000584024 C17orf62-005 82442644-82450776 nonsense_mediated_decay
  ENST00000584408 C17orf62-021 82444471-82450743 nonsense_mediated_decay
  ENST00000584503 C17orf62-024 82443937-82450737 processed_transcript
  ENST00000584791 C17orf62-026 82449755-82450734 processed_transcript
  ENST00000584891 C17orf62-017 82444465-82450750 processed_transcript
  ENST00000585044 C17orf62-007 82442644-82450109 retained_intron
  ENST00000585064 C17orf62-014 82443823-82450770 protein_coding
  ENST00000585080 C17orf62-015 82443997-82450775 protein_coding
  ENST00000585115 C17orf62-016 82449715-82450768 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306645ENST00000342572ENST00000434650ENST00000582438ENST00000584024ENST00000584891ENST00000585044ENST00000585115
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306645 N/A 51.889±0.00 N/A N/A N/A 5.596±0.00 11.062±0.00 15.956±0.00 N/A N/A 36.829±4.42 17.064±6.07 N/A
ENST00000342572 N/A N/A N/A 2.653±0.00 N/A N/A N/A N/A N/A N/A N/A 17.271±0.00 N/A
ENST00000434650 N/A N/A N/A 12.097±0.00 N/A N/A N/A N/A 15.105±0.00 N/A N/A N/A N/A
ENST00000582438 45.441±0.00 N/A 28.582±0.00 N/A 22.618±0.00 N/A 27.346±0.00 29.109±0.00 N/A N/A N/A 17.649±0.00 40.083±0.00
ENST00000584024 N/A N/A N/A N/A 10.495±0.00 N/A N/A N/A 15.244±0.00 N/A N/A N/A N/A
ENST00000584891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.242±0.00 N/A N/A
ENST00000585044 N/A N/A N/A N/A N/A N/A N/A 0.668±0.00 1.898±0.00 N/A N/A N/A N/A
ENST00000585115 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.678±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054N CIL_00054N_0001 CGP 17:82389223-82442645
CIL_00054K CIL_00054K_0001 CGP 17:82418318-82450829
CIL_00043T CIL_00043T_0002 CGP 17:82442589-82490537

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071414 C12H17orf62 (1 of 2) chromosome 17 open reading frame 62 protein_coding Danio_rerio
ENSDARG00000091228 C12H17orf62 (2 of 2) chromosome 17 open reading frame 62 protein_coding Danio_rerio
ENSMUSG00000039294 BC017643 cDNA sequence BC017643 protein_coding Mus_musculus

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