C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nei like 3 (E. coli)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039396 Neil3 10090 - 8:53586867-53639065 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047768 Neil3-001 53586867-53639065 protein_coding
  ENSMUST00000126157 Neil3-004 53605636-53611483 protein_coding
  ENSMUST00000130656 Neil3-006 53606315-53638966 retained_intron
  ENSMUST00000135443 Neil3-002 53609508-53638678 protein_coding
  ENSMUST00000149053 Neil3-005 53605636-53611429 processed_transcript
  ENSMUST00000153267 Neil3-003 53605662-53612564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047768ENSMUST00000126157ENSMUST00000130656ENSMUST00000135443ENSMUST00000149053ENSMUST00000153267
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047768 0.607±0.38 0.216±0.12 0.303±0.18 2.412±0.84 0.103±0.07 1.040±0.48 0.068±0.02 0.060±0.01 16.152±5.84 0.133±0.03 0.038±0.02 0.990±0.57 2.190±1.57 N/A
ENSMUST00000126157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.625±0.00 N/A N/A
ENSMUST00000130656 0.167±0.00 0.213±0.05 N/A 0.268±0.00 0.142±0.11 0.238±0.00 0.051±0.04 0.052±0.01 0.086±0.06 0.074±0.03 0.011±0.00 0.295±0.09 N/A 0.161±0.00
ENSMUST00000135443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.561±0.00 N/A N/A
ENSMUST00000149053 N/A N/A N/A N/A 0.130±0.06 0.835±0.00 N/A 0.045±0.00 N/A 0.238±0.00 N/A 0.686±0.00 N/A N/A
ENSMUST00000153267 0.145±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.321±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000405 IDA bubble DNA binding
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0003684 IEA damaged DNA binding
GO:0003690 IDA double-stranded DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0003906 IDA DNA-(apurinic or apyrimidinic site) lyase activity
GO:0005634 IDA nucleus
GO:0006284 IEA:IDA base-excision repair
GO:0006289 IEA nucleotide-excision repair
GO:0008270 IEA zinc ion binding
GO:0016799 IEA hydrolase activity, hydrolyzing N-glycosyl compounds
GO:0019104 IDA DNA N-glycosylase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020079 neil3 nei endonuclease VIII-like 3 (E. coli) protein_coding Danio_rerio
ENSG00000109674 NEIL3 nei endonuclease VIII-like 3 (E. coli) protein_coding Homo_sapiens

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