C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytoplasmic polyadenylation element binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114065 Cpeb2-001 ENSMUSG00000039782 10090 + 5:43233956-43289724 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114065
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114065 2.481±0.43 2.858±0.12 4.117±1.94 6.665±2.78 1.390±0.96 1.505±0.42 2.561±0.42 2.463±0.48 1.826±1.05 2.770±0.81 2.179±0.40 1.838±0.68 2.817±0.87 9.272±7.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L6 CIL_0007L6_0002 UCNEbase 5:42800809-43289546
CIL_00026K CIL_00026K_0002 CGP 5:43233463-43618817

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000900 ISS translation repressor activity, nucleic acid binding
GO:0005095 ISS GTPase inhibitor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005844 IDA polysome
GO:0008187 IDA poly-pyrimidine tract binding
GO:0032869 ISS cellular response to insulin stimulus
GO:0033125 IGI negative regulation of GTP catabolic process
GO:0034260 ISS negative regulation of GTPase activity
GO:0034599 IDA cellular response to oxidative stress
GO:0035925 IDA mRNA 3'-UTR AU-rich region binding
GO:0043022 IDA ribosome binding
GO:0043023 ISS ribosomal large subunit binding
GO:0043024 ISS ribosomal small subunit binding
GO:0045900 IGI negative regulation of translational elongation
GO:0071243 IDA cellular response to arsenic-containing substance
GO:0071456 IDA cellular response to hypoxia
GO:1900248 ISS negative regulation of cytoplasmic translational elongation
GO:1990124 IDA messenger ribonucleoprotein complex
GO:2000766 IDA negative regulation of cytoplasmic translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000123152 cpeb4-201 protein_coding Danio_rerio 0 604
ENSDART00000079226 cpeb4-001 protein_coding Danio_rerio 0 604
ENSDART00000143695 cpeb4-005 retained_intron Danio_rerio 0 217
ENST00000259997 CPEB2-007 protein_coding Homo_sapiens 0 4313
ENST00000265997 CPEB3-002 protein_coding Homo_sapiens 0 686
ENST00000345451 CPEB2-002 protein_coding Homo_sapiens 0 1899
ENST00000382395 CPEB2-005 protein_coding Homo_sapiens 0 3522
ENST00000382401 CPEB2-006 protein_coding Homo_sapiens 0 3629
ENST00000412050 CPEB3-001 protein_coding Homo_sapiens 0 686
ENST00000442003 CPEB2-201 protein_coding Homo_sapiens 0 3518
ENST00000503926 CPEB2-009 retained_intron Homo_sapiens 0 309
ENST00000507071 CPEB2-001 protein_coding Homo_sapiens 0 2689
ENST00000509684 CPEB2-008 protein_coding Homo_sapiens 0 732
ENST00000538197 CPEB2-202 protein_coding Homo_sapiens 0 4313
ENST00000614585 CPEB3-201 protein_coding Homo_sapiens 0 686

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