C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039929 Urb1 10090 - 16:90751527-90810413 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000128989 Urb1-004 90804294-90810413 retained_intron
  ENSMUST00000140158 Urb1-005 90767020-90772791 retained_intron
  ENSMUST00000140920 Urb1-002 90751527-90810392 protein_coding
  ENSMUST00000140942 Urb1-003 90799507-90810381 retained_intron
  ENSMUST00000142955 Urb1-001 90783143-90810392 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000140920
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000140920 2.265±0.74 2.088±0.24 0.697±0.40 1.723±0.45 2.853±0.88 1.416±0.44 0.783±0.24 1.018±0.16 1.195±0.73 1.474±0.56 0.809±0.12 3.057±0.87 2.162±1.48 8.597±1.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001FB CIL_0001FB_0002 CGP 16:90738324-90810413
CIL_0003KX CIL_0003KX_0002 CGP 16:90751527-90905109

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005730 ISS nucleolus
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060308 URB1 (1 of 2) URB1 ribosome biogenesis 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSDARG00000087043 URB1 (2 of 2) URB1 ribosome biogenesis 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000142207 URB1 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) protein_coding Homo_sapiens

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