C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 2810417H13 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040204 2810417H13Rik 10090 + 9:65890237-65903266 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045802 2810417H13Rik-001 65890237-65903266 protein_coding
  ENSMUST00000130308 2810417H13Rik-003 65890320-65893820 retained_intron
  ENSMUST00000153841 2810417H13Rik-002 65890362-65893148 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045802ENSMUST00000130308ENSMUST00000153841
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045802 1.631±1.52 0.489±0.28 0.847±0.10 14.213±5.04 1.091±0.48 1.924±0.70 0.143±0.01 0.274±0.06 28.397±26.94 0.806±0.46 0.116±0.12 2.435±1.38 4.965±4.60 0.437±0.12
ENSMUST00000130308 3.669±0.46 0.318±0.01 0.690±0.00 N/A N/A 1.565±0.68 0.089±0.00 0.328±0.13 0.317±0.19 0.423±0.00 0.190±0.00 1.289±0.58 0.433±0.08 1.013±0.48
ENSMUST00000153841 0.069±0.00 0.117±0.01 N/A 0.033±0.00 0.113±0.05 0.194±0.03 0.024±0.01 0.089±0.05 0.056±0.03 0.061±0.00 0.040±0.02 0.362±0.27 N/A 0.249±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H0 CIL_0008H0_0002 VISTA 9:65525988-66127110
CIL_0003WZ CIL_0003WZ_0002 CGP 9:65692391-65908794

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 ISS chromatin binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006260 ISS DNA replication
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0009411 ISS response to UV
GO:0019985 ISS translesion synthesis
GO:0048471 ISS perinuclear region of cytoplasm
GO:0051297 ISS centrosome organization
GO:0051726 ISS regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000166803 KIAA0101 KIAA0101 protein_coding Homo_sapiens

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