C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003WZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000043246-ENSDARG00000005033 CGP 7955 7:55791179-56069928
GeneTranscriptPositionBiotype
ENSDARG00000005033 (trip4)
thyroid hormone receptor interactor 4 		ENSDART00000126674 (trip4-001) 55924877-56069928 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003WZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040524-ENSMUSG00000032386 CGP 10090 9:65692391-65908794
GeneTranscriptPositionBiotype
ENSMUSG00000032386 (Trip4)
thyroid hormone receptor interactor 4 		ENSMUST00000117083 (Trip4-002) 65833156-65885056 protein_coding
ENSMUST00000119245 (Trip4-001) 65831759-65908676 protein_coding
ENSMUST00000122410 (Trip4-004) 65831136-65885055 protein_coding
ENSMUST00000126517 (Trip4-005) 65894915-65908786 processed_transcript
ENSMUST00000132380 (Trip4-008) 65839010-65853213 retained_intron
ENSMUST00000133747 (Trip4-006) 65894577-65908719 processed_transcript
ENSMUST00000134338 (Trip4-003) 65880994-65908786 protein_coding
ENSMUST00000139346 (Trip4-007) 65898301-65908786 retained_intron
ENSMUST00000143864 (Trip4-009) 65895381-65908794 processed_transcript
ENSMUST00000179395 (Trip4-201) 65828930-65908794 protein_coding
ENSMUSG00000040204 (2810417H13Rik)
RIKEN cDNA 2810417H13 gene 		ENSMUST00000045802 (2810417H13Rik-001) 65890237-65903266 protein_coding
ENSMUST00000130308 (2810417H13Rik-003) 65890320-65893820 retained_intron
ENSMUST00000153841 (2810417H13Rik-002) 65890362-65893148 retained_intron
ENSMUSG00000040524 (Zfp609)
zinc finger protein 609 		ENSMUST00000159109 (Zfp609-001) 65692391-65827564 protein_coding
ENSMUST00000159878 (Zfp609-003) 65699870-65701144 processed_transcript
ENSMUST00000160747 (Zfp609-002) 65795230-65797912 protein_coding
ENSMUSG00000065301 (Gm23248)
predicted gene, 23248 		ENSMUST00000083367 (Gm23248-201) 65900201-65900308 snRNA
ENSMUSG00000065387 (n-R5s85)
nuclear encoded rRNA 5S 85 		ENSMUST00000083453 (n-R5s85-201) 65836353-65836465 rRNA
ENSMUSG00000079915 (Gm16073)
predicted gene 16073 		ENSMUST00000116032 (Gm16073-001) 65838167-65838683 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003WZ_0001ENSDARG00000005033ENSDART00000126674CIL_0003WZ_0002ENSMUSG00000032386ENSMUST00000117083ENSMUST00000119245ENSMUST00000122410ENSMUST00000126517ENSMUST00000132380ENSMUST00000133747ENSMUST00000134338ENSMUST00000139346ENSMUST00000143864ENSMUST00000179395ENSMUSG00000040204ENSMUST00000045802ENSMUST00000130308ENSMUST00000153841ENSMUSG00000040524ENSMUST00000159109ENSMUST00000159878ENSMUST00000160747ENSMUSG00000065301ENSMUST00000083367ENSMUSG00000065387ENSMUST00000083453ENSMUSG00000079915ENSMUST00000116032
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003WZ_0001ENSDARG00000005033ENSDART00000126674CIL_0003WZ_0002ENSMUSG00000032386ENSMUST00000117083ENSMUST00000119245ENSMUST00000122410ENSMUST00000134338ENSMUST00000139346ENSMUST00000143864ENSMUST00000179395ENSMUSG00000040204ENSMUST00000045802ENSMUST00000130308ENSMUST00000153841ENSMUSG00000040524ENSMUST00000159109ENSMUSG00000065301ENSMUST00000083367ENSMUSG00000065387ENSMUST00000083453ENSMUSG00000079915ENSMUST00000116032
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000005033 ENSDART00000126674 N/A N/A N/A 2.713±1.73 N/A N/A 3.864±0.47 5.699±0.00 0.405±0.00 N/A 3.138±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032386 ENSMUST00000117083 3.265±0.73 2.309±0.40 2.961±0.00 5.316±2.94 2.123±0.51 2.172±0.42 1.284±0.19 1.641±0.36 2.323±0.69 1.819±0.29 1.717±0.37 4.483±3.00 6.639±3.84 9.034±3.42
ENSMUST00000119245 1.124±0.28 N/A N/A N/A 0.943±0.29 0.345±0.11 0.417±0.18 0.663±0.17 N/A N/A 0.682±0.02 0.765±0.20 N/A N/A
ENSMUST00000122410 1.408±0.43 2.053±0.31 3.419±0.28 2.033±0.64 1.514±0.39 0.748±0.30 0.878±0.36 1.661±0.46 2.484±0.83 1.193±0.23 1.647±0.20 2.225±1.34 2.350±0.60 N/A
ENSMUST00000126517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134338 N/A 2.031±0.00 N/A N/A N/A N/A N/A 3.304±0.35 N/A 2.267±0.00 N/A 2.050±0.44 N/A N/A
ENSMUST00000139346 N/A 2.835±0.00 N/A N/A 2.053±0.00 1.920±0.35 N/A 3.188±0.00 N/A N/A N/A 4.930±0.00 N/A 16.816±0.00
ENSMUST00000143864 N/A 3.309±0.44 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.340±0.00
ENSMUST00000179395 0.726±0.00 0.565±0.00 0.836±0.00 1.357±0.69 N/A 0.169±0.00 0.235±0.00 0.775±0.00 0.751±0.09 0.781±0.00 N/A 0.718±0.30 0.683±0.29 1.871±0.00
ENSMUSG00000040204 ENSMUST00000045802 1.631±1.52 0.489±0.28 0.847±0.10 14.213±5.04 1.091±0.48 1.924±0.70 0.143±0.01 0.274±0.06 28.397±26.94 0.806±0.46 0.116±0.12 2.435±1.38 4.965±4.60 0.437±0.12
ENSMUST00000130308 3.669±0.46 0.318±0.01 0.690±0.00 N/A N/A 1.565±0.68 0.089±0.00 0.328±0.13 0.317±0.19 0.423±0.00 0.190±0.00 1.289±0.58 0.433±0.08 1.013±0.48
ENSMUST00000153841 0.069±0.00 0.117±0.01 N/A 0.033±0.00 0.113±0.05 0.194±0.03 0.024±0.01 0.089±0.05 0.056±0.03 0.061±0.00 0.040±0.02 0.362±0.27 N/A 0.249±0.14
ENSMUSG00000040524 ENSMUST00000159109 2.295±0.88 2.830±1.83 3.227±1.71 9.235±6.09 1.297±0.59 1.912±1.11 1.285±0.56 1.684±0.30 1.783±0.50 3.070±0.57 2.966±0.58 4.282±1.77 5.330±2.10 3.244±0.83
ENSMUST00000159878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065301 ENSMUST00000083367 N/A N/A N/A N/A N/A N/A N/A N/A 30.443±0.00 N/A N/A N/A N/A 16.891±0.00
ENSMUSG00000065387 ENSMUST00000083453 N/A N/A N/A N/A N/A N/A N/A N/A 17.721±0.00 N/A 6.391±0.00 17.132±0.00 N/A N/A
ENSMUSG00000079915 ENSMUST00000116032 0.766±0.20 0.747±0.41 0.876±0.23 0.534±0.15 0.708±0.34 0.280±0.16 0.223±0.13 0.416±0.20 0.582±0.31 1.113±0.46 0.272±0.01 1.928±0.95 0.403±0.10 0.466±0.25

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