C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: T cell leukemia, homeobox 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040610 Tlx3 10090 - 11:33200752-33203589 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037746 Tlx3-001 33200752-33203589 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainLiverLungOvaryPlacentaTestisENSMUST00000037746
Transcript ID Adrenal Bladder Brain Liver Lung Ovary Placenta Testis
ENSMUST00000037746 0.076±0.03 0.015±0.00 4.755±3.32 0.015±0.00 0.013±0.00 0.056±0.02 0.113±0.04 0.027±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092S CIL_00092S_0002 VISTA 11:32891798-33493112
CIL_00097F CIL_00097F_0002 VISTA 11:32999598-33601607
CIL_00088M CIL_00088M_0002 VISTA 11:33042866-33643782
CIL_000977 CIL_000977_0002 VISTA 11:33092412-33693558
CIL_00098H CIL_00098H_0002 VISTA 11:33099828-33701076
CIL_0008SG CIL_0008SG_0002 VISTA 11:33129906-33731024
CIL_0004OL CIL_0004OL_0002 CGP 11:33152287-33203589
CIL_0007NP CIL_0007NP_0002 UCNEbase 11:33192157-33430428

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001708 IGI cell fate specification
GO:0001764 IMP neuron migration
GO:0002087 IMP regulation of respiratory gaseous exchange by neurological system process
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007417 IMP central nervous system development
GO:0007585 IMP respiratory gaseous exchange
GO:0030182 IMP neuron differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0045665 IGI negative regulation of neuron differentiation
GO:0048665 IGI neuron fate specification

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017615 tlx3b T-cell leukemia, homeobox 3b protein_coding Danio_rerio
ENSG00000164438 TLX3 T-cell leukemia homeobox 3 protein_coding Homo_sapiens

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