C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004OL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000014329-ENSDARG00000017615 CGP 7955 10:22234687-22257211
GeneTranscriptPositionBiotype
ENSDARG00000014329 (npm1a)
nucleophosmin 1a 		ENSDART00000021240 (npm1a-201) 22234704-22245326 protein_coding
ENSDART00000100526 (npm1a-202) 22234704-22245326 protein_coding
ENSDART00000129634 (npm1a-203) 22234704-22245326 protein_coding
ENSDART00000132888 (npm1a-002) 22234811-22241814 retained_intron
ENSDART00000133304 (npm1a-001) 22234687-22245329 protein_coding
ENSDART00000134189 (npm1a-005) 22234811-22244842 protein_coding
ENSDART00000139208 (npm1a-004) 22241740-22244968 retained_intron
ENSDART00000143461 (npm1a-003) 22235371-22236457 processed_transcript
ENSDARG00000017615 (tlx3b)
T-cell leukemia, homeobox 3b 		ENSDART00000016575 (tlx3b-001) 22251264-22257211 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0004OL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000057113-ENSMUSG00000040610 CGP 10090 11:33152287-33203589
GeneTranscriptPositionBiotype
ENSMUSG00000040610 (Tlx3)
T cell leukemia, homeobox 3 		ENSMUST00000037746 (Tlx3-001) 33200752-33203589 protein_coding
ENSMUSG00000057113 (Npm1)
nucleophosmin 1 		ENSMUST00000075641 (Npm1-001) 33152287-33163206 protein_coding
ENSMUST00000093201 (Npm1-006) 33152510-33163072 protein_coding
ENSMUST00000101375 (Npm1-003) 33155328-33163076 protein_coding
ENSMUST00000109354 (Npm1-002) 33154927-33163077 protein_coding
ENSMUST00000141881 (Npm1-004) 33152511-33154465 processed_transcript
ENSMUST00000146759 (Npm1-005) 33156026-33157277 processed_transcript
ENSMUSG00000099830 (AL772409.1)
 ENSMUST00000055364 (AL772409.1-201) 33172918-33173368 pseudogene
ENSMUSG00000099902 (Gm12115)
predicted gene 12115 		ENSMUST00000119969 (Gm12115-001) 33172919-33173365 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OL_0001ENSDARG00000014329ENSDART00000021240ENSDART00000100526ENSDART00000129634ENSDART00000132888ENSDART00000133304ENSDART00000134189ENSDART00000139208ENSDART00000143461ENSDARG00000017615ENSDART00000016575CIL_0004OL_0002ENSMUSG00000040610ENSMUST00000037746ENSMUSG00000057113ENSMUST00000075641ENSMUST00000093201ENSMUST00000101375ENSMUST00000109354ENSMUST00000141881ENSMUST00000146759ENSMUSG00000099830ENSMUST00000055364ENSMUSG00000099902ENSMUST00000119969
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OL_0001ENSDARG00000014329ENSDART00000021240ENSDART00000133304ENSDARG00000017615ENSDART00000016575CIL_0004OL_0002ENSMUSG00000040610ENSMUST00000037746ENSMUSG00000057113ENSMUST00000075641ENSMUST00000093201ENSMUST00000101375ENSMUST00000109354ENSMUSG00000099830ENSMUST00000055364ENSMUSG00000099902ENSMUST00000119969
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000014329 ENSDART00000021240 N/A N/A N/A 19.161±5.88 N/A N/A 52.244±19.48 68.086±46.60 57.619±0.00 N/A 32.833±0.00 N/A N/A N/A
ENSDART00000100526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000129634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000132888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000133304 N/A N/A N/A N/A N/A N/A 4.223±0.00 26.294±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000134189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000139208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000143461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000017615 ENSDART00000016575 N/A N/A N/A 3.163±0.76 N/A N/A N/A 0.026±0.00 N/A N/A 0.097±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040610 ENSMUST00000037746 N/A 0.076±0.03 0.015±0.00 4.755±3.32 N/A N/A N/A N/A 0.015±0.00 0.013±0.00 N/A 0.056±0.02 0.113±0.04 0.027±0.01
ENSMUSG00000057113 ENSMUST00000075641 N/A 3.076±0.74 23.889±0.00 18.156±2.56 N/A N/A N/A N/A 57.077±30.47 4.084±0.00 34.263±8.46 173.154±10.35 77.150±54.38 7.582±0.91
ENSMUST00000093201 21.078±12.44 3.334±0.92 27.501±5.89 57.682±19.92 15.805±7.54 14.418±9.79 12.068±0.36 20.136±6.11 48.459±43.80 15.440±6.40 N/A 49.444±83.03 253.333±322.74 57.612±59.44
ENSMUST00000101375 64.800±43.20 15.903±5.10 96.421±30.52 143.238±52.39 42.973±9.89 47.542±13.12 30.795±2.48 46.074±7.44 147.055±171.71 47.434±2.00 12.245±3.89 58.472±10.66 768.322±800.31 59.820±31.43
ENSMUST00000109354 5.457±0.61 4.314±0.00 18.813±0.00 21.828±2.41 12.610±3.26 N/A N/A 9.659±0.00 117.711±88.49 8.476±0.00 N/A 61.425±49.83 241.301±186.66 7.933±0.25
ENSMUST00000141881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000099830 ENSMUST00000055364 0.126±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A
ENSMUSG00000099902 ENSMUST00000119969 0.124±0.00 N/A 0.026±0.00 1.382±0.00 0.276±0.00 N/A N/A N/A 0.020±0.00 N/A 0.109±0.00 0.133±0.09 0.102±0.00 1.701±1.57

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