C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007NP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
TLX3 UCNEbase 9606 5:170990945-171323112
GeneTranscriptPositionBiotype
ENSG00000164438 (TLX3)
T-cell leukemia homeobox 3 		ENST00000296921 (TLX3-001) 171309284-171312134 protein_coding
ENSG00000204764 (RANBP17)
RAN binding protein 17 		ENST00000389118 (RANBP17-005) 170861932-171298858 nonsense_mediated_decay
ENST00000443155 (RANBP17-006) 170861870-170911409 retained_intron
ENST00000517629 (RANBP17-021) 170924356-170924918 processed_transcript
ENST00000518492 (RANBP17-015) 170968256-171029200 nonsense_mediated_decay
ENST00000519130 (RANBP17-004) 170862023-170911342 retained_intron
ENST00000519256 (RANBP17-002) 170862018-171243064 nonsense_mediated_decay
ENST00000519944 (RANBP17-011) 170863486-170892490 protein_coding
ENST00000519949 (RANBP17-009) 170862018-171300015 nonsense_mediated_decay
ENST00000520586 (RANBP17-016) 171143272-171205607 processed_transcript
ENST00000520864 (RANBP17-003) 170862035-171207903 nonsense_mediated_decay
ENST00000520879 (RANBP17-013) 170918171-170953668 processed_transcript
ENST00000521165 (RANBP17-014) 170953621-170968506 retained_intron
ENST00000521759 (RANBP17-010) 171143267-171299177 processed_transcript
ENST00000521834 (RANBP17-019) 171241033-171271619 processed_transcript
ENST00000522066 (RANBP17-008) 170862018-171300015 nonsense_mediated_decay
ENST00000522380 (RANBP17-022) 170919451-170970658 processed_transcript
ENST00000522533 (RANBP17-007) 170862018-171300015 nonsense_mediated_decay
ENST00000522734 (RANBP17-012) 170911028-170924407 protein_coding
ENST00000523189 (RANBP17-001) 170861870-171300015 protein_coding
ENST00000523665 (RANBP17-017) 171143312-171205579 processed_transcript
ENST00000523727 (RANBP17-020) 170881839-170896238 retained_intron
ENST00000524364 (RANBP17-018) 171143321-171213682 processed_transcript
ENST00000616486 (RANBP17-201) 171170130-171298858 protein_coding
ENSG00000253213 (RP11-546B8.3)
 ENST00000523223 (RP11-546B8.3-001) 171251866-171252982 processed_pseudogene
ENSG00000275038 (RP11-546B8.6)
 ENST00000619056 (RP11-546B8.6-002) 171305981-171308755 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0007NP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
TLX3 UCNEbase 10090 11:33192157-33430428
GeneTranscriptPositionBiotype
ENSMUSG00000040594 (Ranbp17)
RAN binding protein 17 		ENSMUST00000037522 (Ranbp17-003) 33472416-33513630 protein_coding
ENSMUST00000102815 (Ranbp17-001) 33211795-33513746 protein_coding
ENSMUST00000129179 (Ranbp17-002) 33296394-33513642 nonsense_mediated_decay
ENSMUST00000147751 (Ranbp17-005) 33486033-33513094 protein_coding
ENSMUST00000154808 (Ranbp17-004) 33302767-33330015 processed_transcript
ENSMUSG00000040610 (Tlx3)
T cell leukemia, homeobox 3 		ENSMUST00000037746 (Tlx3-001) 33200752-33203589 protein_coding
ENSMUSG00000069913 (Anp32-ps)
acidic (leucine-rich) nuclear phosphoprotein 32 family, pseudogene 		ENSMUST00000118265 (Anp32-ps-001) 33394879-33395266 processed_pseudogene
ENSMUSG00000087501 (Gm12116)
predicted gene 12116 		ENSMUST00000131851 (Gm12116-001) 33204055-33221477 lincRNA
ENSMUSG00000098456 (Gm12117)
predicted gene 12117 		ENSMUST00000183831 (Gm12117-002) 33275879-33276334 protein_coding
ENSMUST00000184486 (Gm12117-001) 33275758-33276737 translated_processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007NP_0001ENSG00000164438ENST00000296921ENSG00000204764ENST00000389118ENST00000443155ENST00000517629ENST00000518492ENST00000519130ENST00000519256ENST00000519944ENST00000519949ENST00000520586ENST00000520864ENST00000520879ENST00000521165ENST00000521759ENST00000521834ENST00000522066ENST00000522380ENST00000522533ENST00000522734ENST00000523189ENST00000523665ENST00000523727ENST00000524364ENST00000616486ENSG00000253213ENST00000523223ENSG00000275038ENST00000619056CIL_0007NP_0002ENSMUSG00000040594ENSMUST00000037522ENSMUST00000102815ENSMUST00000129179ENSMUST00000147751ENSMUST00000154808ENSMUSG00000040610ENSMUST00000037746ENSMUSG00000069913ENSMUST00000118265ENSMUSG00000087501ENSMUST00000131851ENSMUSG00000098456ENSMUST00000183831ENSMUST00000184486
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007NP_0001ENSG00000164438ENST00000296921ENSG00000204764ENST00000389118ENST00000443155ENST00000519130ENST00000519256ENST00000519944ENST00000519949ENST00000520586ENST00000520864ENST00000520879ENST00000521165ENST00000521759ENST00000522066ENST00000522380ENST00000522533ENST00000523189ENST00000523665ENST00000523727ENST00000524364ENST00000616486ENSG00000253213ENST00000523223ENSG00000275038ENST00000619056CIL_0007NP_0002ENSMUSG00000040594ENSMUST00000037522ENSMUST00000102815ENSMUST00000129179ENSMUST00000147751ENSMUSG00000040610ENSMUST00000037746ENSMUSG00000069913ENSMUST00000118265ENSMUSG00000087501ENSMUST00000131851ENSMUSG00000098456ENSMUST00000183831ENSMUST00000184486
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000164438 ENST00000296921 0.031±0.00 N/A N/A N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A 0.134±0.00 0.072±0.00 0.032±0.00
ENSG00000204764 ENST00000389118 N/A 0.119±0.00 N/A 0.111±0.00 0.101±0.00 N/A N/A N/A N/A N/A N/A 0.189±0.00 0.205±0.00 0.899±0.00
ENST00000443155 N/A N/A 0.642±0.00 0.208±0.00 N/A N/A N/A N/A N/A 4.700±0.00 N/A N/A 0.193±0.00 N/A
ENST00000517629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519130 N/A N/A 0.336±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519256 0.057±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.119±0.00 N/A N/A
ENST00000519944 0.552±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.094±0.00 N/A N/A
ENST00000520586 N/A N/A N/A N/A N/A N/A 1.689±0.00 1.200±0.00 5.918±0.00 N/A N/A N/A N/A N/A
ENST00000520864 N/A N/A N/A N/A 0.546±0.00 1.080±0.00 N/A N/A 0.396±0.00 N/A N/A 0.426±0.00 N/A N/A
ENST00000520879 N/A N/A N/A 4.509±0.00 N/A 4.719±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.049±0.00 N/A N/A
ENST00000521759 N/A 0.299±0.00 N/A 0.162±0.00 0.218±0.00 0.063±0.00 0.059±0.00 0.288±0.00 0.067±0.00 0.300±0.00 N/A 0.373±0.00 0.344±0.19 2.981±0.46
ENST00000521834 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522066 N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A N/A 0.102±0.00 N/A N/A 0.245±0.00 1.496±0.77
ENST00000522380 0.267±0.00 0.572±0.00 N/A N/A 1.537±1.20 0.205±0.00 0.200±0.00 0.214±0.00 N/A 0.231±0.00 0.129±0.00 0.651±0.00 N/A 6.315±0.00
ENST00000522533 N/A 0.193±0.00 N/A N/A N/A N/A 0.036±0.00 N/A 0.020±0.00 N/A N/A N/A N/A N/A
ENST00000522734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523189 0.056±0.00 N/A N/A N/A 0.076±0.00 0.028±0.00 N/A N/A N/A N/A N/A 0.118±0.00 0.232±0.06 N/A
ENST00000523665 N/A N/A N/A N/A N/A N/A 2.958±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000523727 N/A N/A N/A N/A N/A N/A N/A 0.443±0.00 N/A N/A N/A N/A N/A N/A
ENST00000524364 N/A N/A N/A 4.602±0.00 2.130±0.00 3.607±0.00 0.131±0.00 N/A N/A 5.552±0.00 0.304±0.20 N/A N/A N/A
ENST00000616486 0.147±0.00 N/A N/A 1.156±0.00 N/A N/A 1.078±0.00 0.413±0.00 N/A N/A N/A 0.842±0.42 0.286±0.00 N/A
ENSG00000253213 ENST00000523223 N/A 0.009±0.00 N/A 0.261±0.00 N/A 0.167±0.00 0.017±0.00 0.036±0.00 N/A 0.070±0.00 N/A 0.055±0.03 0.063±0.00 0.227±0.21
ENSG00000275038 ENST00000619056 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A 0.022±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040594 ENSMUST00000037522 0.324±0.00 N/A 0.154±0.00 0.962±0.34 0.095±0.01 0.070±0.00 0.042±0.01 N/A 0.504±0.21 N/A 0.025±0.02 0.842±0.15 0.369±0.08 N/A
ENSMUST00000102815 0.314±0.04 0.539±0.10 0.368±0.08 2.221±1.23 0.217±0.07 0.208±0.13 0.046±0.01 0.109±0.03 0.525±0.55 0.444±0.00 0.034±0.02 0.603±0.16 0.806±0.22 6.024±1.99
ENSMUST00000129179 N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.16 N/A 0.010±0.00 N/A 0.417±0.11 N/A
ENSMUST00000147751 N/A N/A N/A N/A N/A 0.178±0.00 0.164±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000040610 ENSMUST00000037746 N/A 0.076±0.03 0.015±0.00 4.755±3.32 N/A N/A N/A N/A 0.015±0.00 0.013±0.00 N/A 0.056±0.02 0.113±0.04 0.027±0.01
ENSMUSG00000069913 ENSMUST00000118265 N/A N/A 0.035±0.00 0.175±0.08 N/A N/A N/A N/A 0.097±0.07 N/A N/A N/A 0.201±0.09 N/A
ENSMUSG00000087501 ENSMUST00000131851 N/A N/A N/A 1.264±0.92 0.193±0.05 N/A N/A N/A 0.028±0.01 0.141±0.00 0.023±0.01 0.436±0.03 0.367±0.00 N/A
ENSMUSG00000098456 ENSMUST00000183831 0.091±0.00 0.229±0.08 N/A 0.201±0.00 0.114±0.00 N/A 0.082±0.00 N/A 0.021±0.00 N/A N/A N/A 0.082±0.00 0.111±0.04
ENSMUST00000184486 N/A N/A 0.028±0.00 0.062±0.02 N/A N/A N/A N/A 0.016±0.01 N/A N/A 0.046±0.01 0.072±0.03 0.061±0.01

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