C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polyhomeotic-like 1 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040669 Phc1 10090 - 6:122317731-122340561 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079560 Phc1-201 122317731-122337015 protein_coding
  ENSMUST00000081849 Phc1-202 122317731-122337015 protein_coding
  ENSMUST00000112600 Phc1-203 122318304-122340561 protein_coding
  ENSMUST00000159252 Phc1-006 122317750-122339656 protein_coding
  ENSMUST00000159384 Phc1-010 122333395-122340224 protein_coding
  ENSMUST00000159657 Phc1-012 122334135-122337296 protein_coding
  ENSMUST00000160163 Phc1-002 122318303-122339612 nonsense_mediated_decay
  ENSMUST00000160696 Phc1-005 122317750-122338864 protein_coding
  ENSMUST00000160843 Phc1-007 122325947-122340506 protein_coding
  ENSMUST00000160863 Phc1-013 122332672-122335145 retained_intron
  ENSMUST00000161054 Phc1-001 122317850-122339645 protein_coding
  ENSMUST00000161149 Phc1-011 122334134-122339708 protein_coding
  ENSMUST00000161210 Phc1-008 122334139-122339627 protein_coding
  ENSMUST00000161290 Phc1-009 122325555-122336919 nonsense_mediated_decay
  ENSMUST00000161739 Phc1-004 122317738-122339658 protein_coding
  ENSMUST00000161877 Phc1-003 122318303-122339612 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079560ENSMUST00000081849ENSMUST00000112600ENSMUST00000159252ENSMUST00000160163ENSMUST00000160696ENSMUST00000161054ENSMUST00000161149ENSMUST00000161739ENSMUST00000161877
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079560 N/A 4.722±1.74 N/A 9.727±1.49 2.338±0.72 1.503±0.58 0.711±0.13 4.211±1.17 0.422±0.19 2.618±0.00 2.444±0.00 7.066±3.31 2.011±0.92 12.927±0.00
ENSMUST00000081849 1.463±0.63 2.146±0.00 1.474±0.40 N/A 1.367±0.00 1.904±0.87 1.610±0.00 2.612±0.31 0.447±0.20 2.533±0.63 N/A 4.787±0.97 1.534±0.83 N/A
ENSMUST00000112600 N/A 3.055±0.45 N/A 11.753±0.00 2.306±0.76 2.063±0.66 1.348±0.00 N/A 0.514±0.00 1.496±0.00 3.074±0.61 5.372±1.57 3.038±1.39 37.821±8.78
ENSMUST00000159252 N/A N/A N/A N/A N/A N/A 0.509±0.13 N/A N/A N/A 1.073±0.00 N/A N/A N/A
ENSMUST00000160163 N/A N/A N/A N/A N/A N/A N/A N/A 0.183±0.00 N/A N/A N/A N/A N/A
ENSMUST00000160696 N/A N/A N/A 4.805±2.80 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161054 1.721±0.72 2.351±0.31 0.735±0.08 6.864±0.19 N/A N/A 0.988±0.36 1.584±0.00 0.457±0.23 2.476±0.65 1.469±0.00 3.207±0.91 1.480±0.82 N/A
ENSMUST00000161149 N/A N/A N/A 42.190±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 32.215±0.00 N/A
ENSMUST00000161739 2.887±1.59 2.062±0.26 1.317±0.63 4.351±0.91 2.045±0.66 2.421±0.90 1.983±0.58 3.168±0.75 0.586±0.29 2.249±0.46 3.200±0.75 3.437±1.10 1.345±0.69 30.346±5.03
ENSMUST00000161877 N/A N/A 0.631±0.00 5.486±3.38 N/A 0.842±0.00 N/A 1.461±0.14 0.280±0.06 1.307±0.00 N/A 3.595±0.47 0.896±0.49 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HL CIL_0008HL_0002 VISTA 6:122092605-122696323

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001739 IDA sex chromatin
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0008270 IEA zinc ion binding
GO:0016574 IEA histone ubiquitination
GO:0016604 IDA nuclear body
GO:0031519 IEA PcG protein complex
GO:0035102 IEA PRC1 complex
GO:0071300 IDA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002971 phc1 polyhomeotic homolog 1 protein_coding Danio_rerio
ENSG00000111752 PHC1 polyhomeotic homolog 1 (Drosophila) protein_coding Homo_sapiens

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