C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polyhomeotic-like 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161877 Phc1-003 ENSMUSG00000040669 10090 - 6:122318303-122339612 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonKidneyLiverLungOvaryPlacentaENSMUST00000161877
Transcript ID Bladder Brain Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000161877 0.631±0.00 5.486±3.38 0.842±0.00 1.461±0.14 0.280±0.06 1.307±0.00 3.595±0.47 0.896±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HL CIL_0008HL_0002 VISTA 6:122092605-122696323

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001739 IDA sex chromatin
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0016604 IDA nuclear body
GO:0071300 IDA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251636 DHX29-001 protein_coding Homo_sapiens 0.0003 53
ENST00000433083 PHC1-003 protein_coding Homo_sapiens 0 2073
ENST00000433847 PHC1-005 processed_transcript Homo_sapiens 0 2041
ENST00000504778 DHX29-002 retained_intron Homo_sapiens 0.0003 53
ENST00000535510 PHC1-014 nonsense_mediated_decay Homo_sapiens 0 268
ENST00000537610 PHC1-012 protein_coding Homo_sapiens 0 374
ENST00000538657 PHC1-006 protein_coding Homo_sapiens 0 645
ENST00000539063 PHC1-009 protein_coding Homo_sapiens 0 399
ENST00000539928 PHC1-011 processed_transcript Homo_sapiens 0 763
ENST00000540574 PHC1-004 nonsense_mediated_decay Homo_sapiens 0 1218
ENST00000540809 PHC1-013 retained_intron Homo_sapiens 0 368
ENST00000541181 PHC1-007 protein_coding Homo_sapiens 0 329
ENST00000542346 PHC1-010 protein_coding Homo_sapiens 0 379
ENST00000543824 PHC1-001 protein_coding Homo_sapiens 0 2494
ENST00000544539 PHC1-008 protein_coding Homo_sapiens 0 662
ENST00000544916 PHC1-002 protein_coding Homo_sapiens 0 2501
ENST00000554937 PHC1P1-001 processed_pseudogene Homo_sapiens 0 2217
ENST00000621106 DHX29-201 protein_coding Homo_sapiens 0.0003 53

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