C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polyhomeotic homolog 1 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111752 PHC1 9606 + 12:8913896-8941467 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000433083 PHC1-003 8914731-8941467 protein_coding
  ENST00000433847 PHC1-005 8914696-8933973 processed_transcript
  ENST00000535510 PHC1-014 8933322-8937249 nonsense_mediated_decay
  ENST00000537610 PHC1-012 8930916-8934000 protein_coding
  ENST00000538657 PHC1-006 8913896-8922691 protein_coding
  ENST00000539063 PHC1-009 8914782-8930544 protein_coding
  ENST00000539928 PHC1-011 8930612-8933980 processed_transcript
  ENST00000540574 PHC1-004 8915760-8941467 nonsense_mediated_decay
  ENST00000540809 PHC1-013 8933537-8935228 retained_intron
  ENST00000541181 PHC1-007 8917655-8921717 protein_coding
  ENST00000542346 PHC1-010 8922744-8940070 protein_coding
  ENST00000543824 PHC1-001 8914553-8940404 protein_coding
  ENST00000544539 PHC1-008 8914773-8922720 protein_coding
  ENST00000544916 PHC1-002 8914741-8939935 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000543824ENST00000544916
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000543824 4.321±0.00 7.879±0.00 1.594±0.00 3.973±0.00 4.523±0.00 5.732±0.00 3.345±0.00 4.559±0.00 4.544±2.18 2.792±1.92 10.226±0.80 4.226±0.10 11.056±4.48
ENST00000544916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.170±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HL CIL_0008HL_0001 VISTA 12:8543390-9149656

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001739 IEA sex chromatin
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0016574 IDA histone ubiquitination
GO:0016604 IEA nuclear body
GO:0031519 IDA PcG protein complex
GO:0035102 IDA PRC1 complex
GO:0071300 IEA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002971 phc1 polyhomeotic homolog 1 protein_coding Danio_rerio
ENSMUSG00000040669 Phc1 polyhomeotic-like 1 (Drosophila) protein_coding Mus_musculus

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