C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: argonaute RISC catalytic subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041530 Ago1 10090 - 4:126435012-126468583 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000097888 Ago1-001 126435012-126468583 protein_coding
  ENSMUST00000127800 Ago1-002 126438321-126461782 nonsense_mediated_decay
  ENSMUST00000149425 Ago1-003 126459315-126460125 retained_intron
  ENSMUST00000156533 Ago1-004 126442600-126443361 retained_intron
  ENSMUST00000176315 Ago1-005 126439503-126459207 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097888ENSMUST00000176315
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097888 3.582±1.81 3.665±2.15 4.864±1.04 16.301±10.07 2.561±0.68 2.995±1.54 1.707±0.36 2.184±0.73 1.876±0.83 5.634±2.85 1.649±0.27 5.778±2.95 2.337±1.87 0.715±0.34
ENSMUST00000176315 N/A N/A N/A N/A 4.172±0.00 2.432±0.00 N/A N/A N/A N/A N/A 5.954±1.43 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JR CIL_0002JR_0002 CGP 4:126331704-126468583

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0000956 ISS nuclear-transcribed mRNA catabolic process
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 ISO cytoplasm
GO:0005829 IDA cytosol
GO:0005844 ISS polysome
GO:0006351 IEA transcription, DNA-templated
GO:0010586 IDA miRNA metabolic process
GO:0010628 IMP positive regulation of gene expression
GO:0030529 ISS ribonucleoprotein complex
GO:0035068 ISS micro-ribonucleoprotein complex
GO:0035198 IDA miRNA binding
GO:0035278 ISS negative regulation of translation involved in gene silencing by miRNA
GO:0044822 IEA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000092644 AGO1 argonaute RISC catalytic component 1 protein_coding Danio_rerio
ENSG00000092847 AGO1 argonaute RISC catalytic component 1 protein_coding Homo_sapiens

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