C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: argonaute RISC catalytic subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097888 Ago1-001 ENSMUSG00000041530 10090 - 4:126435012-126468583 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097888
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097888 3.582±1.81 3.665±2.15 4.864±1.04 16.301±10.07 2.561±0.68 2.995±1.54 1.707±0.36 2.184±0.73 1.876±0.83 5.634±2.85 1.649±0.27 5.778±2.95 2.337±1.87 0.715±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JR CIL_0002JR_0002 CGP 4:126331704-126468583

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0000956 ISS nuclear-transcribed mRNA catabolic process
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 ISO cytoplasm
GO:0005829 IDA cytosol
GO:0005844 ISS polysome
GO:0006351 IEA transcription, DNA-templated
GO:0010586 IDA miRNA metabolic process
GO:0010628 IMP positive regulation of gene expression
GO:0030529 ISS ribonucleoprotein complex
GO:0035068 ISS micro-ribonucleoprotein complex
GO:0035198 IDA miRNA binding
GO:0035278 ISS negative regulation of translation involved in gene silencing by miRNA
GO:0044822 IEA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000156255 AGO1-001 protein_coding Danio_rerio 0 1997
ENSDART00000138318 AGO1-201 protein_coding Danio_rerio 0 1927
ENSDART00000091813 ago3b-001 protein_coding Danio_rerio 0 1328
ENSDART00000129463 ago4-201 protein_coding Danio_rerio 0 604
ENST00000220592 AGO2-001 protein_coding Homo_sapiens 0 1395
ENST00000246314 AGO3-002 protein_coding Homo_sapiens 0 1110
ENST00000373191 AGO3-003 protein_coding Homo_sapiens 0 1194
ENST00000373204 AGO1-002 protein_coding Homo_sapiens 0 6167
ENST00000373206 AGO1-001 protein_coding Homo_sapiens 0 5040
ENST00000519980 AGO2-002 protein_coding Homo_sapiens 0 1068
ENST00000520412 AGO2-008 retained_intron Homo_sapiens 0 436
ENST00000523609 AGO2-003 nonsense_mediated_decay Homo_sapiens 0 1349

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