Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info
Description:	patched domain containing 2
Gene Accession	Gene Name	Tax ID	Strand	Position	Gene Biotype
ENSMUSG00000041544	Ptchd2	10090	-	4:148240264-148287965	protein_coding
	Transcript Accession		Transcript Name	Position	Transcript Biotype
	ENSMUST00000047720		Ptchd2-001	148240264-148287965	protein_coding
	ENSMUST00000129734		Ptchd2-002	148259879-148261231	processed_transcript
	ENSMUST00000143851		Ptchd2-003	148258216-148260751	retained_intron
Mus musculus EnsemblGRCm38 Genome Exciting message Genes Gene structures from Ensembl Connecting Transcripts Structures from Ensembl Connecting Powered by Dalliance 0.11.11

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENSMUST00000047720	0.017±0.01	0.191±0.06	0.020±0.01	5.679±2.26	0.012±0.00	0.064±0.02	0.005±0.00	0.012±0.01	0.008±0.00	0.010±0.01	0.024±0.01	0.045±0.02	0.021±0.02	0.202±0.12
ENSMUST00000129734	N/A	N/A	N/A	N/A	N/A	0.260±0.00	N/A	N/A	N/A	N/A	0.158±0.00	0.274±0.10	0.162±0.12	N/A
ENSMUST00000143851	N/A	N/A	N/A	N/A	0.105±0.03	N/A	N/A	0.051±0.00	0.024±0.00	N/A	N/A	0.124±0.00	0.013±0.00	N/A

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_00087H	CIL_00087H_0002	VISTA	4:147665245-148272946

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0003674	ND	molecular_function
GO:0005575	ND	cellular_component
GO:0007165	IEA	signal transduction
GO:0008150	ND	biological_process
GO:0008158	IEA	hedgehog receptor activity
GO:0016021	IEA	integral component of membrane

Homologs
ENSEMBL Accession	Gene Name	Description	Biotype	Species
ENSDARG00000036999	PTCHD2	Uncharacterized protein	protein_coding	Danio_rerio
ENSG00000204624	PTCHD2	patched domain containing 2	protein_coding	Homo_sapiens

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