C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: patched domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041544 Ptchd2 10090 - 4:148240264-148287965 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047720 Ptchd2-001 148240264-148287965 protein_coding
  ENSMUST00000129734 Ptchd2-002 148259879-148261231 processed_transcript
  ENSMUST00000143851 Ptchd2-003 148258216-148260751 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047720ENSMUST00000129734ENSMUST00000143851
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047720 0.017±0.01 0.191±0.06 0.020±0.01 5.679±2.26 0.012±0.00 0.064±0.02 0.005±0.00 0.012±0.01 0.008±0.00 0.010±0.01 0.024±0.01 0.045±0.02 0.021±0.02 0.202±0.12
ENSMUST00000129734 N/A N/A N/A N/A N/A 0.260±0.00 N/A N/A N/A N/A 0.158±0.00 0.274±0.10 0.162±0.12 N/A
ENSMUST00000143851 N/A N/A N/A N/A 0.105±0.03 N/A N/A 0.051±0.00 0.024±0.00 N/A N/A 0.124±0.00 0.013±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087H CIL_00087H_0002 VISTA 4:147665245-148272946

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0007165 IEA signal transduction
GO:0008150 ND biological_process
GO:0008158 IEA hedgehog receptor activity
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036999 PTCHD2 Uncharacterized protein protein_coding Danio_rerio
ENSG00000204624 PTCHD2 patched domain containing 2 protein_coding Homo_sapiens

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