C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: triggering receptor expressed on myeloid cells 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042265 Trem1 10090 + 17:48232768-48246924 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048782 Trem1-001 48232771-48246924 protein_coding
  ENSMUST00000113251 Trem1-002 48232768-48246362 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048782ENSMUST00000113251
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048782 0.045±0.01 0.027±0.00 0.007±0.00 0.009±0.00 0.109±0.01 0.049±0.03 0.049±0.00 0.019±0.01 0.707±0.64 0.610±0.11 N/A 0.091±0.00 0.039±0.01 0.609±0.63
ENSMUST00000113251 N/A N/A N/A 0.004±0.00 0.041±0.01 0.035±0.00 0.026±0.00 0.014±0.00 0.019±0.00 0.095±0.00 0.020±0.00 0.123±0.07 0.033±0.03 0.094±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XI CIL_0008XI_0002 VISTA 17:47688296-48291797
CIL_0008IB CIL_0008IB_0002 VISTA 17:47708185-48309224
CIL_0007QG CIL_0007QG_0002 VISTA 17:47710565-48311720
CIL_0008F3 CIL_0008F3_0002 VISTA 17:47757242-48358147

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002374 IGI cytokine secretion involved in immune response
GO:0016021 IEA integral component of membrane
GO:0016477 IGI cell migration
GO:0030593 IGI neutrophil chemotaxis
GO:0042107 IGI cytokine metabolic process
GO:0050755 IGI chemokine metabolic process
GO:0070945 IGI neutrophil mediated killing of gram-negative bacterium
GO:0072672 IGI neutrophil extravasation
GO:0097110 IEA scaffold protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000124731 TREM1 triggering receptor expressed on myeloid cells 1 protein_coding Homo_sapiens

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