C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: triggering receptor expressed on myeloid cells 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048782 Trem1-001 ENSMUSG00000042265 10090 + 17:48232771-48246924 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000048782
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000048782 0.045±0.01 0.027±0.00 0.007±0.00 0.009±0.00 0.109±0.01 0.049±0.03 0.049±0.00 0.019±0.01 0.707±0.64 0.610±0.11 0.091±0.00 0.039±0.01 0.609±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XI CIL_0008XI_0002 VISTA 17:47688296-48291797
CIL_0008IB CIL_0008IB_0002 VISTA 17:47708185-48309224
CIL_0007QG CIL_0007QG_0002 VISTA 17:47710565-48311720
CIL_0008F3 CIL_0008F3_0002 VISTA 17:47757242-48358147

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002374 IGI cytokine secretion involved in immune response
GO:0016021 IEA integral component of membrane
GO:0016477 IGI cell migration
GO:0030593 IGI neutrophil chemotaxis
GO:0042107 IGI cytokine metabolic process
GO:0050755 IGI chemokine metabolic process
GO:0070945 IGI neutrophil mediated killing of gram-negative bacterium
GO:0072672 IGI neutrophil extravasation
GO:0097110 IEA scaffold protein binding

Homologs

No Homologs available.

Loading