C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UPF2 regulator of nonsense transcripts homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043241 Upf2 10090 + 2:5951469-6056703 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000060092 Upf2-001 5951469-6056703 protein_coding
  ENSMUST00000128200 Upf2-002 6023339-6056698 protein_coding
  ENSMUST00000144901 Upf2-003 6050427-6055502 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060092ENSMUST00000128200
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060092 0.685±0.32 0.756±0.24 4.186±1.18 6.072±4.75 0.800±0.29 0.707±0.15 1.016±0.29 0.946±0.36 3.311±1.13 1.568±0.44 4.183±0.46 5.054±5.90 5.686±2.03 10.159±10.51
ENSMUST00000128200 1.439±0.61 0.502±0.32 3.749±0.00 4.281±3.48 0.940±0.28 0.946±0.17 0.508±0.13 1.144±0.41 1.537±0.92 1.376±0.42 1.919±0.43 2.937±3.47 4.814±3.79 3.036±1.73

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001889 IMP liver development
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0031100 IMP organ regeneration
GO:0035145 IEA exon-exon junction complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074658 upf2 UPF2 regulator of nonsense transcripts homolog (yeast) protein_coding Danio_rerio
ENSG00000151461 UPF2 UPF2 regulator of nonsense transcripts homolog (yeast) protein_coding Homo_sapiens

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