C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UPF2 regulator of nonsense transcripts homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060092 Upf2-001 ENSMUSG00000043241 10090 + 2:5951469-6056703 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060092
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060092 0.685±0.32 0.756±0.24 4.186±1.18 6.072±4.75 0.800±0.29 0.707±0.15 1.016±0.29 0.946±0.36 3.311±1.13 1.568±0.44 4.183±0.46 5.054±5.90 5.686±2.03 10.159±10.51

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001889 IMP liver development
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0031100 IMP organ regeneration
GO:0035145 IEA exon-exon junction complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356352 UPF2-001 protein_coding Homo_sapiens 0 6911
ENST00000357604 UPF2-002 protein_coding Homo_sapiens 0 7027
ENST00000397053 UPF2-201 protein_coding Homo_sapiens 0 6911
ENST00000460569 UPF2-004 processed_transcript Homo_sapiens 0 497

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