C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UPF2 regulator of nonsense transcripts homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000151461 UPF2 9606 - 10:11920022-12043170 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000356352 UPF2-001 11920022-12035897 protein_coding
  ENST00000357604 UPF2-002 11920022-12042834 protein_coding
  ENST00000397053 UPF2-201 11920023-12043170 protein_coding
  ENST00000460569 UPF2-004 12035059-12043170 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357604ENST00000397053ENST00000460569
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357604 6.722±0.00 6.504±0.00 1.647±0.00 6.121±0.00 4.449±0.65 6.527±4.03 3.260±2.27 3.924±1.82 2.967±0.12 3.826±0.04 5.024±4.07 6.315±1.62 5.339±3.44 20.470±7.07
ENST00000397053 N/A N/A N/A 1.651±0.00 N/A N/A N/A N/A 0.588±0.00 N/A N/A N/A N/A N/A
ENST00000460569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.212±0.00 11.217±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EV CIL_0008EV_0001 VISTA 10:11379308-11980769

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001889 IEA liver development
GO:0003723 IEA RNA binding
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006406 TAS mRNA export from nucleus
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0031100 IEA organ regeneration
GO:0035145 IDA exon-exon junction complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074658 upf2 UPF2 regulator of nonsense transcripts homolog (yeast) protein_coding Danio_rerio
ENSMUSG00000043241 Upf2 UPF2 regulator of nonsense transcripts homolog (yeast) protein_coding Mus_musculus

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