C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043458 Pcdhb12 10090 + 18:37435621-37438654 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055495 Pcdhb12-201 37435621-37438654 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055495
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055495 1.474±0.61 0.586±0.01 0.688±0.05 0.925±0.13 0.909±0.29 0.476±0.12 0.376±0.05 0.410±0.10 0.033±0.03 1.678±0.22 0.096±0.02 2.564±1.22 0.036±0.03 0.679±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000W CGP 18:37421418-37438654
CIL_00062S CIL_00062S_000H CGP 18:37435621-37446209

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005887 ISS integral component of plasma membrane
GO:0005911 IDA cell-cell junction
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSG00000113209 PCDHB5 protocadherin beta 5 protein_coding Homo_sapiens

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