C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113209 PCDHB5 9606 + 5:141135218-141138625 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000231134 PCDHB5-001 141135218-141138625 protein_coding
  ENST00000623915 PCDHB5-002 141135229-141137449 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverOvaryPlacentaENST00000231134
Transcript ID Bladder Brain Colon Heart Kidney Liver Ovary Placenta
ENST00000231134 0.870±0.00 2.670±0.64 0.760±0.00 1.105±0.35 1.128±0.97 0.823±0.69 2.096±0.97 0.504±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_0004 CGP 5:141094578-141152636
CIL_00062S CIL_00062S_0005 CGP 5:141100473-141152636
CIL_00062S CIL_00062S_0003 CGP 5:141121799-141138625
CIL_00062S CIL_00062S_0006 CGP 5:141135218-141153287

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSMUSG00000043458 Pcdhb12 protocadherin beta 12 protein_coding Mus_musculus
ENSMUSG00000045657 Pcdhb10 protocadherin beta 10 protein_coding Mus_musculus
ENSMUSG00000045689 Pcdhb4 protocadherin beta 4 protein_coding Mus_musculus
ENSMUSG00000045876 Pcdhb8 protocadherin beta 8 protein_coding Mus_musculus
ENSMUSG00000051486 Pcdhb11 protocadherin beta 11 protein_coding Mus_musculus
ENSMUSG00000051678 Pcdhb6 protocadherin beta 6 protein_coding Mus_musculus

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