C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055495 Pcdhb12-201 ENSMUSG00000043458 10090 + 18:37435621-37438654 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055495
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055495 1.474±0.61 0.586±0.01 0.688±0.05 0.925±0.13 0.909±0.29 0.476±0.12 0.376±0.05 0.410±0.10 0.033±0.03 1.678±0.22 0.096±0.02 2.564±1.22 0.036±0.03 0.679±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000W CGP 18:37421418-37438654
CIL_00062S CIL_00062S_000H CGP 18:37435621-37446209

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005887 ISS integral component of plasma membrane
GO:0005911 IDA cell-cell junction
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000231134 PCDHB5-001 protein_coding Homo_sapiens 0 1613
ENST00000231173 PCDHB15-001 protein_coding Homo_sapiens 0 785
ENST00000239444 PCDHB8-001 protein_coding Homo_sapiens 0 784
ENST00000239446 PCDHB10-001 protein_coding Homo_sapiens 0 789
ENST00000316105 PCDHB9-001 protein_coding Homo_sapiens 0 804
ENST00000341948 PCDHB13-001 protein_coding Homo_sapiens 2e-26 126
ENST00000515856 PCDHB10-201 protein_coding Homo_sapiens 0 789
ENST00000623671 PCDHB15-002 protein_coding Homo_sapiens 5e-24 115

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