C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA C130050O18 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000044092 C130050O18Rik 10090 + 5:139405280-139415623 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052176 C130050O18Rik-002 139406387-139415618 protein_coding
  ENSMUST00000163940 C130050O18Rik-001 139405280-139415621 protein_coding
  ENSMUST00000164078 C130050O18Rik-003 139406465-139415623 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052176ENSMUST00000163940ENSMUST00000164078
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052176 0.591±0.16 0.778±0.21 N/A 0.131±0.01 0.503±0.16 0.947±0.21 0.185±0.05 1.197±0.35 0.473±0.21 2.258±0.69 0.117±0.07 0.544±0.34 0.190±0.05 0.180±0.08
ENSMUST00000163940 0.786±0.00 0.137±0.00 0.181±0.01 0.123±0.00 0.566±0.12 N/A 0.220±0.07 0.311±0.07 0.382±0.21 0.995±0.60 N/A 0.474±0.19 0.091±0.00 N/A
ENSMUST00000164078 N/A 0.101±0.03 N/A N/A 0.194±0.04 0.134±0.06 0.067±0.00 N/A 0.062±0.03 0.264±0.00 0.035±0.00 0.163±0.09 0.051±0.03 0.078±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008V5 CIL_0008V5_0002 VISTA 5:139236245-139837428
CIL_0008DL CIL_0008DL_0002 VISTA 5:139238772-139840184
CIL_0000ZU CIL_0000ZU_0002 CGP 5:139352617-139460502
CIL_0000ZR CIL_0000ZR_0002 CGP 5:139359739-139460502

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

No Homologs available.

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