C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 109, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000044134 Fam109a 10090 + 5:121849028-121854599 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056654 Fam109a-201 121849028-121854599 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056654
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056654 4.587±1.56 8.753±1.41 3.595±0.62 14.453±8.00 5.504±0.97 40.187±2.44 4.493±1.17 8.326±0.89 3.381±1.20 7.709±1.73 2.449±0.62 10.027±3.75 17.843±4.41 3.500±0.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TJ CIL_0008TJ_0002 VISTA 5:121625608-122227679
CIL_000903 CIL_000903_0002 VISTA 5:121732502-122333355
CIL_0008YU CIL_0008YU_0002 VISTA 5:121792218-122394768
CIL_0005LG CIL_0005LG_0002 CGP 5:121815488-121854599

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001881 IEA receptor recycling
GO:0005515 IEA protein binding
GO:0005769 IEA early endosome
GO:0005802 IEA trans-Golgi network
GO:0007032 IEA endosome organization
GO:0030136 IEA clathrin-coated vesicle
GO:0042147 IEA retrograde transport, endosome to Golgi
GO:0042803 IEA protein homodimerization activity
GO:0055037 IEA recycling endosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067546 FAM109B family with sequence similarity 109, member B protein_coding Danio_rerio
ENSG00000198324 FAM109A family with sequence similarity 109, member A protein_coding Homo_sapiens

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