C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000044155 Lsm8 10090 + 6:18848579-18855751 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056398 Lsm8-001 18848579-18854053 protein_coding
  ENSMUST00000128526 Lsm8-003 18848656-18850407 retained_intron
  ENSMUST00000136982 Lsm8-002 18848641-18855751 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056398ENSMUST00000128526ENSMUST00000136982
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056398 10.439±4.01 14.852±3.89 12.065±0.00 26.658±12.10 8.821±1.11 7.858±1.76 7.742±1.73 8.538±1.34 18.258±15.92 10.479±2.29 9.276±1.75 15.102±9.80 36.309±11.41 18.462±5.05
ENSMUST00000128526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.885±0.00 N/A N/A
ENSMUST00000136982 N/A N/A 0.542±0.00 0.326±0.00 0.331±0.00 N/A N/A N/A N/A N/A N/A 0.601±0.06 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003QX CIL_0003QX_0002 CGP 6:18366478-18855751
CIL_0003QY CIL_0003QY_0002 CGP 6:18848579-18879586

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091656 lsm8 LSM8 homolog, U6 small nuclear RNA associated protein_coding Danio_rerio
ENSG00000128534 LSM8 LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Homo_sapiens

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