C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128534 LSM8 9606 + 7:118184032-118192824 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000249299 LSM8-001 118184032-118192824 protein_coding
  ENST00000411938 LSM8-004 118184167-118188405 protein_coding
  ENST00000422760 LSM8-003 118184156-118192164 protein_coding
  ENST00000424702 LSM8-002 118184144-118192155 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000249299ENST00000411938ENST00000422760ENST00000424702
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000249299 3.146±0.00 N/A 2.008±0.00 2.785±0.63 2.086±0.78 1.804±0.17 3.483±1.72 4.547±2.93 2.639±0.00 1.416±0.09 5.796±1.55 5.721±0.92 5.202±1.33
ENST00000411938 15.313±0.00 26.358±0.00 N/A 15.197±0.00 11.087±0.00 10.016±0.00 N/A 5.304±0.00 20.118±0.00 10.864±0.00 48.057±27.98 13.778±7.87 26.746±11.93
ENST00000422760 N/A 3.131±0.00 0.724±0.00 1.167±0.00 N/A N/A 1.462±0.00 0.334±0.00 N/A N/A 2.595±0.77 N/A N/A
ENST00000424702 0.484±0.00 1.857±0.00 0.505±0.00 0.581±0.06 0.377±0.13 0.235±0.07 0.541±0.33 0.822±0.00 0.657±0.16 N/A 1.012±0.54 0.328±0.00 0.830±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003QX CIL_0003QX_0001 CGP 7:117710651-118192824
CIL_0003QY CIL_0003QY_0001 CGP 7:118184032-118242731

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0017070 NAS U6 snRNA binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091656 lsm8 LSM8 homolog, U6 small nuclear RNA associated protein_coding Danio_rerio
ENSMUSG00000044155 Lsm8 LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein_coding Mus_musculus

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