C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003QX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000077063-ENSG00000128534 CGP 9606 7:117710651-118192824
GeneTranscriptPositionBiotype
ENSG00000001626 (CFTR)
cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) 		ENST00000003084 (CFTR-001) 117479963-117668665 protein_coding
ENST00000426809 (CFTR-005) 117480095-117667071 protein_coding
ENST00000429014 (CFTR-007) 117689713-117715971 processed_transcript
ENST00000446805 (CFTR-004) 117479304-117530978 protein_coding
ENST00000468795 (CFTR-002) 117611617-117627910 protein_coding
ENST00000472848 (CFTR-006) 117559638-117587749 processed_transcript
ENST00000546407 (CFTR-003) 117465784-117504308 processed_transcript
ENST00000600166 (CFTR-008) 117652843-117715948 protein_coding
ENST00000608965 (CFTR-009) 117710017-117715873 processed_transcript
ENST00000610149 (CFTR-010) 117710132-117715827 processed_transcript
ENST00000621535 (CFTR-011) 117713753-117715901 retained_intron
ENSG00000077063 (CTTNBP2)
cortactin binding protein 2 		ENST00000160373 (CTTNBP2-001) 117710651-117873507 protein_coding
ENST00000412853 (CTTNBP2-007) 117810767-117874139 protein_coding
ENST00000416239 (CTTNBP2-004) 117755380-117760593 protein_coding
ENST00000434890 (CTTNBP2-002) 117792586-117871638 protein_coding
ENST00000435233 (CTTNBP2-009) 117735331-117760647 protein_coding
ENST00000441556 (CTTNBP2-012) 117710863-117873429 nonsense_mediated_decay
ENST00000445366 (CTTNBP2-010) 117711628-117728208 nonsense_mediated_decay
ENST00000446636 (CTTNBP2-011) 117710741-117791780 protein_coding
ENST00000454375 (CTTNBP2-006) 117792662-117872220 protein_coding
ENST00000467088 (CTTNBP2-008) 117760268-117767191 retained_intron
ENST00000482124 (CTTNBP2-005) 117755372-117758112 retained_intron
ENST00000487820 (CTTNBP2-003) 117792596-117793605 processed_transcript
ENSG00000128534 (LSM8)
LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae) 		ENST00000249299 (LSM8-001) 118184032-118192824 protein_coding
ENST00000411938 (LSM8-004) 118184167-118188405 protein_coding
ENST00000422760 (LSM8-003) 118184156-118192164 protein_coding
ENST00000424702 (LSM8-002) 118184144-118192155 protein_coding
ENSG00000224136 (AC007568.1)
 ENST00000422912 (AC007568.1-001) 117882859-117883675 processed_pseudogene
ENSG00000234826 (AC003084.2)
 ENST00000427030 (AC003084.2-001) 117998858-118004045 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003QX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000416-ENSMUSG00000044155 CGP 10090 6:18366478-18855751
GeneTranscriptPositionBiotype
ENSMUSG00000000416 (Cttnbp2)
cortactin binding protein 2 		ENSMUST00000090601 (Cttnbp2-003) 18366547-18514869 protein_coding
ENSMUST00000129669 (Cttnbp2-008) 18435251-18513091 protein_coding
ENSMUST00000139557 (Cttnbp2-002) 18431940-18514799 retained_intron
ENSMUST00000140416 (Cttnbp2-006) 18501626-18514843 retained_intron
ENSMUST00000141581 (Cttnbp2-009) 18389145-18408694 protein_coding
ENSMUST00000142963 (Cttnbp2-007) 18448250-18502056 protein_coding
ENSMUST00000146775 (Cttnbp2-004) 18366565-18434451 protein_coding
ENSMUST00000148602 (Cttnbp2-001) 18366707-18514749 nonsense_mediated_decay
ENSMUST00000149570 (Cttnbp2-010) 18367526-18382860 nonsense_mediated_decay
ENSMUST00000152499 (Cttnbp2-005) 18366478-18428231 retained_intron
ENSMUSG00000044155 (Lsm8)
LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae) 		ENSMUST00000056398 (Lsm8-001) 18848579-18854053 protein_coding
ENSMUST00000128526 (Lsm8-003) 18848656-18850407 retained_intron
ENSMUST00000136982 (Lsm8-002) 18848641-18855751 retained_intron
ENSMUSG00000071568 (Gm5874)
predicted gene 5874 		ENSMUST00000096101 (Gm5874-201) 18824552-18825058 processed_pseudogene
ENSMUSG00000084947 (Gm15594)
predicted gene 15594 		ENSMUST00000137958 (Gm15594-001) 18424684-18427885 antisense
ENSMUSG00000097815 (Gm26809)
predicted gene, 26809 		ENSMUST00000180863 (Gm26809-201) 18844220-18847360 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003QX_0001ENSG00000001626ENST00000003084ENST00000426809ENST00000429014ENST00000446805ENST00000468795ENST00000472848ENST00000546407ENST00000600166ENST00000608965ENST00000610149ENST00000621535ENSG00000077063ENST00000160373ENST00000412853ENST00000416239ENST00000434890ENST00000435233ENST00000441556ENST00000445366ENST00000446636ENST00000454375ENST00000467088ENST00000482124ENST00000487820ENSG00000128534ENST00000249299ENST00000411938ENST00000422760ENST00000424702ENSG00000224136ENST00000422912ENSG00000234826ENST00000427030CIL_0003QX_0002ENSMUSG00000000416ENSMUST00000090601ENSMUST00000129669ENSMUST00000139557ENSMUST00000140416ENSMUST00000141581ENSMUST00000142963ENSMUST00000146775ENSMUST00000148602ENSMUST00000149570ENSMUST00000152499ENSMUSG00000044155ENSMUST00000056398ENSMUST00000128526ENSMUST00000136982ENSMUSG00000071568ENSMUST00000096101ENSMUSG00000084947ENSMUST00000137958ENSMUSG00000097815ENSMUST00000180863
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003QX_0001ENSG00000001626ENST00000003084ENST00000426809ENSG00000077063ENST00000160373ENST00000441556ENST00000446636ENSG00000128534ENST00000249299ENST00000411938ENST00000422760ENST00000424702ENSG00000224136ENST00000422912ENSG00000234826ENST00000427030CIL_0003QX_0002ENSMUSG00000000416ENSMUST00000090601ENSMUST00000139557ENSMUST00000140416ENSMUST00000141581ENSMUST00000146775ENSMUST00000148602ENSMUST00000149570ENSMUST00000152499ENSMUSG00000044155ENSMUST00000056398ENSMUST00000128526ENSMUST00000136982ENSMUSG00000071568ENSMUST00000096101ENSMUSG00000084947ENSMUST00000137958ENSMUSG00000097815ENSMUST00000180863
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000001626 ENST00000003084 N/A N/A N/A N/A 0.735±0.00 6.627±4.56 0.031±0.00 N/A N/A 1.562±0.40 N/A 7.786±6.54 0.065±0.00 N/A
ENST00000426809 N/A N/A N/A N/A 0.789±0.00 12.898±0.00 N/A 0.892±0.00 N/A 2.432±0.00 N/A 8.171±0.00 N/A N/A
ENST00000429014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000077063 ENST00000160373 N/A 0.563±0.00 N/A 1.082±0.45 N/A N/A 0.162±0.00 0.497±0.00 0.142±0.00 0.510±0.10 N/A N/A 0.174±0.04 0.169±0.00
ENST00000412853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441556 0.342±0.00 N/A N/A 1.439±0.98 0.328±0.00 N/A 0.233±0.00 0.604±0.00 1.225±0.00 N/A N/A N/A 0.203±0.02 0.524±0.00
ENST00000445366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446636 N/A N/A 0.495±0.00 N/A 0.211±0.00 N/A N/A 1.400±0.00 N/A N/A 0.098±0.00 N/A 0.070±0.00 N/A
ENST00000454375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000128534 ENST00000249299 3.146±0.00 N/A 2.008±0.00 N/A 2.785±0.63 2.086±0.78 1.804±0.17 3.483±1.72 4.547±2.93 2.639±0.00 1.416±0.09 5.796±1.55 5.721±0.92 5.202±1.33
ENST00000411938 15.313±0.00 26.358±0.00 N/A N/A 15.197±0.00 11.087±0.00 10.016±0.00 N/A 5.304±0.00 20.118±0.00 10.864±0.00 48.057±27.98 13.778±7.87 26.746±11.93
ENST00000422760 N/A 3.131±0.00 0.724±0.00 N/A 1.167±0.00 N/A N/A 1.462±0.00 0.334±0.00 N/A N/A 2.595±0.77 N/A N/A
ENST00000424702 0.484±0.00 1.857±0.00 0.505±0.00 N/A 0.581±0.06 0.377±0.13 0.235±0.07 0.541±0.33 0.822±0.00 0.657±0.16 N/A 1.012±0.54 0.328±0.00 0.830±0.33
ENSG00000224136 ENST00000422912 N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234826 ENST00000427030 N/A N/A N/A N/A 0.099±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000416 ENSMUST00000090601 0.975±0.76 5.935±1.15 0.548±0.18 3.012±0.08 0.393±0.06 1.625±0.30 0.142±0.01 1.569±0.26 0.128±0.08 1.607±0.12 0.022±0.00 0.786±0.29 0.154±0.06 0.265±0.15
ENSMUST00000129669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139557 0.658±0.06 2.307±0.24 N/A 3.359±0.56 0.147±0.00 0.512±0.04 0.096±0.00 0.806±0.22 0.057±0.00 0.728±0.11 0.031±0.01 0.401±0.17 0.063±0.02 0.361±0.00
ENSMUST00000140416 N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A N/A
ENSMUST00000141581 N/A N/A N/A N/A N/A N/A N/A N/A 0.097±0.00 N/A N/A N/A N/A N/A
ENSMUST00000142963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146775 N/A N/A 0.419±0.03 8.009±0.00 N/A N/A N/A N/A N/A N/A 0.096±0.04 0.858±0.31 0.144±0.06 0.158±0.00
ENSMUST00000148602 0.348±0.00 N/A 0.282±0.00 7.750±2.26 0.110±0.00 N/A 0.108±0.00 N/A 0.050±0.04 N/A 0.064±0.04 0.504±0.20 0.098±0.06 0.411±0.16
ENSMUST00000149570 0.453±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.048±0.00 N/A N/A
ENSMUST00000152499 0.059±0.00 N/A N/A 2.894±0.48 N/A N/A N/A 0.518±0.00 0.043±0.02 N/A N/A 0.476±0.00 0.112±0.05 N/A
ENSMUSG00000044155 ENSMUST00000056398 10.439±4.01 14.852±3.89 12.065±0.00 26.658±12.10 8.821±1.11 7.858±1.76 7.742±1.73 8.538±1.34 18.258±15.92 10.479±2.29 9.276±1.75 15.102±9.80 36.309±11.41 18.462±5.05
ENSMUST00000128526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.885±0.00 N/A N/A
ENSMUST00000136982 N/A N/A 0.542±0.00 0.326±0.00 0.331±0.00 N/A N/A N/A N/A N/A N/A 0.601±0.06 N/A N/A
ENSMUSG00000071568 ENSMUST00000096101 0.600±0.32 0.342±0.16 N/A 0.542±0.50 0.363±0.05 0.399±0.19 0.419±0.25 0.144±0.05 0.475±0.15 N/A N/A 0.362±0.22 2.052±1.83 0.420±0.02
ENSMUSG00000084947 ENSMUST00000137958 N/A N/A N/A N/A N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A 0.083±0.00 0.233±0.00
ENSMUSG00000097815 ENSMUST00000180863 76.509±11.66 69.642±5.05 78.265±19.47 7.253±1.49 101.553±21.94 18.652±2.44 86.221±14.24 27.246±1.41 74.977±56.33 107.042±27.49 5.307±2.07 232.337±21.33 20.131±13.95 30.125±7.32

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