C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NHL repeat containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000044231 Nhlrc1 10090 - 13:47012558-47014850 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052747 Nhlrc1-201 47012558-47014850 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052747
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052747 1.766±0.28 6.555±1.13 2.276±0.43 3.215±0.89 1.932±0.34 4.086±0.32 3.172±0.32 1.290±0.18 0.788±0.49 3.622±0.68 2.704±0.29 5.313±2.71 0.191±0.09 0.336±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081D CIL_00081D_0002 VISTA 13:46435395-47036634
CIL_00090E CIL_00090E_0002 VISTA 13:46584783-47186478
CIL_0003RK CIL_0003RK_0002 CGP 13:46749087-47014850
CIL_0008X6 CIL_0008X6_0002 VISTA 13:47010584-47612217
CIL_0003RL CIL_0003RL_0002 CGP 13:47012558-47044737

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000209 ISS protein polyubiquitination
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0006914 IEA autophagy
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0031398 IDA positive regulation of protein ubiquitination
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000187566 NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 protein_coding Homo_sapiens

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