C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U7 snRNP-specific Sm-like protein LSM11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062458 Lsm11-002 ENSMUSG00000044847 10090 - 11:45931080-45944935 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000062458
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000062458 0.889±0.00 4.040±1.09 3.106±0.37 2.508±0.46 0.446±0.00 0.403±0.07 0.799±0.55 0.850±0.00 2.169±0.67 1.117±0.56 0.481±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053M CIL_00053M_0002 CGP 11:45852051-45944935
CIL_00094M CIL_00094M_0002 VISTA 11:45901358-46503267

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005683 ISS U7 snRNP
GO:0006398 IDA histone mRNA 3'-end processing
GO:0071204 IDA histone pre-mRNA 3'end processing complex
GO:0071209 ISS U7 snRNA binding
GO:1900087 ISS positive regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000286307 LSM11-001 protein_coding Homo_sapiens 0 1291

Loading