C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051754 Pcdhb3-201 ENSMUSG00000045498 10090 + 18:37300799-37304585 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051754
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051754 0.949±0.69 0.270±0.08 0.336±0.02 1.149±0.28 0.502±0.19 0.242±0.03 0.146±0.05 0.128±0.02 0.023±0.01 1.282±0.08 0.020±0.01 1.764±1.08 0.024±0.01 0.377±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000X CGP 18:37294840-37304585
CIL_00062S CIL_00062S_000L CGP 18:37300799-37311173

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000194152 PCDHB4-001 protein_coding Homo_sapiens 0 894
ENST00000194155 PCDHB2-001 protein_coding Homo_sapiens 0 941
ENST00000231130 PCDHB3-001 protein_coding Homo_sapiens 0 1842
ENST00000231134 PCDHB5-001 protein_coding Homo_sapiens 0 915
ENST00000231136 PCDHB6-001 protein_coding Homo_sapiens 0 898
ENST00000231173 PCDHB15-001 protein_coding Homo_sapiens 0 883
ENST00000239444 PCDHB8-001 protein_coding Homo_sapiens 0 824
ENST00000239446 PCDHB10-001 protein_coding Homo_sapiens 0 900
ENST00000239449 PCDHB14-001 protein_coding Homo_sapiens 0 894
ENST00000239450 PCDHB12-001 protein_coding Homo_sapiens 0 872
ENST00000341948 PCDHB13-001 protein_coding Homo_sapiens 0 789
ENST00000354757 PCDHB11-001 protein_coding Homo_sapiens 0 863
ENST00000515856 PCDHB10-201 protein_coding Homo_sapiens 0 900
ENST00000539533 PCDHB17-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 887
ENST00000543635 PCDHB3-201 protein_coding Homo_sapiens 0 1500
ENST00000609684 PCDHB16-001 protein_coding Homo_sapiens 0 859
ENST00000622947 PCDHB2-003 protein_coding Homo_sapiens 0 907
ENST00000622978 PCDHB12-003 protein_coding Homo_sapiens 0 872
ENST00000622991 PCDHB6-002 protein_coding Homo_sapiens 0 894
ENST00000623466 PCDHB17-002 processed_transcript Homo_sapiens 0 887
ENST00000623478 PCDHB4-002 processed_transcript Homo_sapiens 0 747
ENST00000623915 PCDHB5-002 protein_coding Homo_sapiens 0 728
ENST00000624887 PCDHB11-002 protein_coding Homo_sapiens 0 863
ENST00000624896 PCDHB14-003 protein_coding Homo_sapiens 0 894
ENST00000624949 PCDHB12-002 protein_coding Homo_sapiens 0 872

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