C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000045657 Pcdhb10 10090 + 18:37411674-37414514 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000051126 Pcdhb10-201 37411674-37414514 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051126
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051126 1.664±0.67 0.637±0.05 0.260±0.05 0.967±0.62 0.804±0.34 0.435±0.08 0.123±0.07 0.265±0.07 0.043±0.03 2.194±0.55 0.064±0.03 1.301±0.68 0.021±0.02 0.029±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000V CGP 18:37400855-37414514
CIL_00062S CIL_00062S_000M CGP 18:37411674-37425032

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSG00000113209 PCDHB5 protocadherin beta 5 protein_coding Homo_sapiens

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