C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051126 Pcdhb10-201 ENSMUSG00000045657 10090 + 18:37411674-37414514 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051126
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051126 1.664±0.67 0.637±0.05 0.260±0.05 0.967±0.62 0.804±0.34 0.435±0.08 0.123±0.07 0.265±0.07 0.043±0.03 2.194±0.55 0.064±0.03 1.301±0.68 0.021±0.02 0.029±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000V CGP 18:37400855-37414514
CIL_00062S CIL_00062S_000M CGP 18:37411674-37425032

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000231134 PCDHB5-001 protein_coding Homo_sapiens 0 1631
ENST00000231173 PCDHB15-001 protein_coding Homo_sapiens 0 797
ENST00000239444 PCDHB8-001 protein_coding Homo_sapiens 0 843
ENST00000239446 PCDHB10-001 protein_coding Homo_sapiens 0 780
ENST00000316105 PCDHB9-001 protein_coding Homo_sapiens 0 758
ENST00000341948 PCDHB13-001 protein_coding Homo_sapiens 2e-31 143
ENST00000515856 PCDHB10-201 protein_coding Homo_sapiens 0 780
ENST00000539533 PCDHB17-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 924
ENST00000543635 PCDHB3-201 protein_coding Homo_sapiens 0 883
ENST00000623466 PCDHB17-002 processed_transcript Homo_sapiens 0 924
ENST00000623671 PCDHB15-002 protein_coding Homo_sapiens 2e-22 110
ENST00000623915 PCDHB5-002 protein_coding Homo_sapiens 0 676

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