Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	protein associated with topoisomerase II homolog 1 (yeast)
ENSMUST00000061618	Patl1-201	ENSMUSG00000046139	10090	+	19:11912399-11945096	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENSMUST00000061618	5.009±1.65	10.369±1.62	4.784±0.14	8.812±3.95	9.624±0.66	5.357±0.95	6.414±1.24	6.458±1.33	5.603±1.66	8.440±0.65	4.199±1.18	10.015±3.34	10.571±3.83	2.767±1.14

Conserved Regions
Gene is not located within a conserved region.

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0000290	ISS	deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932	ISS	cytoplasmic mRNA processing body
GO:0002151	ISO	G-quadruplex RNA binding
GO:0003723	ISS	RNA binding
GO:0005515	IEA	protein binding
GO:0005634	IEA	nucleus
GO:0005737	ISO	cytoplasm
GO:0008266	ISO	poly(U) RNA binding
GO:0017148	ISO	negative regulation of translation
GO:0030014	ISS	CCR4-NOT complex
GO:0030371	ISO	translation repressor activity
GO:0033962	ISS	cytoplasmic mRNA processing body assembly
GO:0034046	ISO	poly(G) binding
GO:0043231	IEA	intracellular membrane-bounded organelle
GO:0044822	IEA	poly(A) RNA binding

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSDART00000100937	patl1-201	protein_coding	Danio_rerio	2.94273e-44	185
ENSDART00000139577	patl1-001	protein_coding	Danio_rerio	2.94273e-44	185
ENST00000300146	PATL1-001	protein_coding	Homo_sapiens	0	4481
ENST00000449048	RP11-339B21.8-001	processed_pseudogene	Homo_sapiens	0	989
ENST00000531919	PATL1-004	retained_intron	Homo_sapiens	0	219
ENST00000597336	CTC-471F3.5-001	processed_pseudogene	Homo_sapiens	0	2386

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