C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin beta 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000046191 Pcdhb20 10090 + 18:37504264-37507658 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052179 Pcdhb20-201 37504264-37507658 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052179
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052179 1.662±1.00 3.459±0.53 1.582±0.15 2.550±0.98 0.681±0.21 1.196±0.38 0.865±0.07 0.447±0.09 0.057±0.02 2.629±0.62 0.222±0.05 2.647±2.01 0.064±0.09 0.129±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000G CGP 18:37496997-37507658
CIL_00062S CIL_00062S_000P CGP 18:37504264-37518313

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010684 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000071889 pcdh2g8 protocadherin 2 gamma 8 protein_coding Danio_rerio
ENSDARG00000071891 pcdh2g6 protocadherin 2 gamma 6 protein_coding Danio_rerio
ENSDARG00000071892 CU915772.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000074738 pcdh2g9 protocadherin 2 gamma 9 protein_coding Danio_rerio
ENSDARG00000077343 CT573264.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077867 CT573264.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000079937 pcdh2g5 protocadherin 2 gamma 5 protein_coding Danio_rerio
ENSG00000120327 PCDHB14 protocadherin beta 14 protein_coding Homo_sapiens

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