C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052179 Pcdhb20-201 ENSMUSG00000046191 10090 + 18:37504264-37507658 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052179
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052179 1.662±1.00 3.459±0.53 1.582±0.15 2.550±0.98 0.681±0.21 1.196±0.38 0.865±0.07 0.447±0.09 0.057±0.02 2.629±0.62 0.222±0.05 2.647±2.01 0.064±0.09 0.129±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000G CGP 18:37496997-37507658
CIL_00062S CIL_00062S_000P CGP 18:37504264-37518313

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000239449 PCDHB14-001 protein_coding Homo_sapiens 0 2017

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